View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_high_7 (Length: 266)
Name: NF20245_high_7
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_high_7 |
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| [»] chr4 (3 HSPs) |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0013 (2 HSPs) |
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| [»] chr3 (1 HSPs) |
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| [»] chr8 (3 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 242; Significance: 1e-134; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 242; E-Value: 1e-134
Query Start/End: Original strand, 13 - 266
Target Start/End: Original strand, 102813 - 103066
Alignment:
| Q |
13 |
agaacatcgcaaagagattcttcgttacatttactgtcaccaagtatgtgctatctatctaccattgcttcttttgctacttaattaccggtgaaatttg |
112 |
Q |
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| T |
102813 |
agaacatcgcaaagagattcttcgttacatttactgtcaccaagtatgtgctatctatctaccattgcttcttttgctacttaattacccgtgaaatttg |
102912 |
T |
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| Q |
113 |
agattgaacgaacatgttgtgatttcattttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaa |
212 |
Q |
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| T |
102913 |
atattgaacgaacatgttgtgatttcattttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaa |
103012 |
T |
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| Q |
213 |
ctatatatgtatgcgaattctcggagaaggacctgatggaggtcaagacaatgc |
266 |
Q |
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| T |
103013 |
ctatatatgtatgcgaattctcggagaaggacctgatggcggtcaagacaatgc |
103066 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 127 - 266
Target Start/End: Original strand, 162107 - 162246
Alignment:
| Q |
127 |
tgttgtgatttcattttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgc |
226 |
Q |
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| T |
162107 |
tgttgtgggttcattttgaagaatgaagatggtggatgggggctacaaattgagggtcacagtaccatgttttgtactgcactcaactatatatgtatgc |
162206 |
T |
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| Q |
227 |
gaattctcggagaaggacctgatggaggtcaagacaatgc |
266 |
Q |
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| T |
162207 |
ggattcttggagaaggacctgatggaggtcaagacaatgc |
162246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 12 - 67
Target Start/End: Original strand, 161913 - 161968
Alignment:
| Q |
12 |
aagaacatcgcaaagagattcttcgttacatttactgtcaccaagtatgtgctatc |
67 |
Q |
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| T |
161913 |
aagagcatcgcaaagagattcttcgttacatttactgtcaccaggtaggtgttatc |
161968 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 90; Significance: 1e-43; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 141 - 266
Target Start/End: Original strand, 13051841 - 13051966
Alignment:
| Q |
141 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
240 |
Q |
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| T |
13051841 |
tttgaagaatgaagatggagggtggggtctacacattgagggtcacagcaccatgttttgtactgcactgaactatatatgcctgagaattcttggagaa |
13051940 |
T |
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| Q |
241 |
ggacctgatggaggtcaagacaatgc |
266 |
Q |
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| T |
13051941 |
gggccggatggaggtcaagacaatgc |
13051966 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013 (Bit Score: 78; Significance: 2e-36; HSPs: 2)
Name: scaffold0013
Description:
Target: scaffold0013; HSP #1
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 93434 - 93309
Alignment:
| Q |
141 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
240 |
Q |
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|||| |||||||||||||||| |||||||||||||||||||||||||||| |||||||| ||||||||| ||||| ||||||||||| ||||| ||| || |
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| T |
93434 |
tttgcagaatgaagatggagggtgggggctacacattgagggtcacagcatcatgttttctactgcactcaactacatatgtatgcggattcttggacaa |
93335 |
T |
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| Q |
241 |
ggacctgatggaggtcaagacaatgc |
266 |
Q |
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| T |
93334 |
ggtcctgatggcggtcaaaacaatgc |
93309 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0013; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 59
Target Start/End: Complemental strand, 93622 - 93577
Alignment:
| Q |
14 |
gaacatcgcaaagagattcttcgttacatttactgtcaccaagtat |
59 |
Q |
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| T |
93622 |
gaacatcgtaaagagattcttcgttacatatattgtcaccaggtat |
93577 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 12138322 - 12138197
Alignment:
| Q |
141 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
240 |
Q |
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| T |
12138322 |
tttgaagaatgaagatggagggttcggattacacatagagggtcatagtaccatgttttgtaccacactcaattatatatgtatgcgaattcttggagaa |
12138223 |
T |
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| Q |
241 |
ggacctgatggaggtcaagacaatgc |
266 |
Q |
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| T |
12138222 |
gggcctaatggaggtcaagacaatgc |
12138197 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 62; Significance: 7e-27; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 5671057 - 5670932
Alignment:
| Q |
141 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
240 |
Q |
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||||||||||||||||||||||||||| |||||| | |||||||||| | |||||||||||||| ||| ||||| |||||||||||||| || |||||| |
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| T |
5671057 |
tttgaagaatgaagatggaggatggggactacacgtagagggtcacaatatcatgttttgtactgtactcaactacatatgtatgcgaatacttggagaa |
5670958 |
T |
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| Q |
241 |
ggacctgatggaggtcaagacaatgc |
266 |
Q |
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|| || |||||||| |||| ||||| |
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| T |
5670957 |
ggtccaaatggaggtaaagaaaatgc |
5670932 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 5723147 - 5723022
Alignment:
| Q |
141 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
240 |
Q |
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||||||||||||||||||||||||||| |||||| | ||||||||||| | |||||||||||| | ||||||||| ||||| |||||||| || |||||| |
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| T |
5723147 |
tttgaagaatgaagatggaggatggggactacacgtagagggtcacagtatcatgttttgtaccgtacttaactacatatgcatgcgaatacttggagaa |
5723048 |
T |
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| Q |
241 |
ggacctgatggaggtcaagacaatgc |
266 |
Q |
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|| || |||||||| |||| ||||| |
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| T |
5723047 |
ggtccaaatggaggtaaagaaaatgc |
5723022 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 141 - 266
Target Start/End: Complemental strand, 5692803 - 5692678
Alignment:
| Q |
141 |
tttgaagaatgaagatggaggatgggggctacacattgagggtcacagcaccatgttttgtactgcacttaactatatatgtatgcgaattctcggagaa |
240 |
Q |
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||||||||||||||||||||||||||| |||||| | ||||||||||| | |||||||||||| | ||| ||||| ||||| |||||||| || |||||| |
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| T |
5692803 |
tttgaagaatgaagatggaggatggggactacacgtagagggtcacagtatcatgttttgtacagtactcaactacatatgcatgcgaatacttggagaa |
5692704 |
T |
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| Q |
241 |
ggacctgatggaggtcaagacaatgc |
266 |
Q |
| |
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|| || |||||||| |||| ||||| |
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| T |
5692703 |
ggtccaaatggaggtaaagaaaatgc |
5692678 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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