View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20245_high_8 (Length: 250)

Name: NF20245_high_8
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20245_high_8
NF20245_high_8
[»] chr4 (13 HSPs)
chr4 (13-250)||(50249648-50249884)
chr4 (108-177)||(48734359-48734428)
chr4 (146-248)||(37826021-37826121)
chr4 (108-176)||(48865055-48865121)
chr4 (156-214)||(7801490-7801548)
chr4 (108-177)||(48853665-48853735)
chr4 (103-177)||(45370972-45371046)
chr4 (176-247)||(7772880-7772946)
chr4 (160-214)||(7814330-7814384)
chr4 (160-214)||(7823822-7823876)
chr4 (108-142)||(50681946-50681980)
chr4 (108-149)||(7879391-7879432)
chr4 (147-214)||(50669943-50670013)
[»] chr7 (1 HSPs)
chr7 (108-178)||(48884917-48884987)


Alignment Details
Target: chr4 (Bit Score: 191; Significance: 1e-104; HSPs: 13)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 13 - 250
Target Start/End: Original strand, 50249648 - 50249884
Alignment:
Q  13 attctgaaaagaaatcctatctagactgaatataaagagagtaaagaacatagagagcagaactgaataattttgaaattagnnnnnnnncttttctggt 112  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||         ||| |||||    
T  50249648 attctgaaaagaaatcctatctagactgaatataaagagagtaaagaacatagagagcagaactgaataattttgaaattagttttttt--tttcctggt 50249745  T
Q  113 ttgaaacagataaatggcaagggccaaagtt-aatagagtccgctgaaattagagaacaaaacctttttccttcaatatgcataaactcatcagattaat 211  Q
    ||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  50249746 ttgaaacagataaatggcaagggccaaagtttaatagagtccactgaaattagagaacaaaacctttttccttcaatatgcataaactcatcagattaat 50249845  T
Q  212 ttattttatcatataaaacaatttcagacagtgacaaca 250  Q
    |||||||||||||||||||||||||||||||||||||||    
T  50249846 ttattttatcatataaaacaatttcagacagtgacaaca 50249884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 108 - 177
Target Start/End: Original strand, 48734359 - 48734428
Alignment:
Q  108 ctggtttgaaacagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaacctt 177  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||||||| ||||||||||| ||||||||    
T  48734359 ctggtttgaaacagagaaatggcaagggctaaagttaatagagtccgctaaaattagagaagaaaacctt 48734428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 146 - 248
Target Start/End: Original strand, 37826021 - 37826121
Alignment:
Q  146 tagagtccgctgaaattagagaacaaaacctt---tttccttcaatatgcataaactcatcagattaatttattttatcatataaaacaatttcagacag 242  Q
    |||||||| |||||||||||||||||||||||   ||||||||||||||||||| ||||||| |||||||||      |||||||||| |||||||||||    
T  37826021 tagagtccactgaaattagagaacaaaaccttatttttccttcaatatgcataacctcatcaaattaatttac-----catataaaaccatttcagacag 37826115  T
Q  243 tgacaa 248  Q
    ||||||    
T  37826116 tgacaa 37826121  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 108 - 176
Target Start/End: Complemental strand, 48865121 - 48865055
Alignment:
Q  108 ctggtttgaaacagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaacct 176  Q
    |||||||||||||||  |||||||| ||||| || |||| |||||||||||||||||||||||||||||    
T  48865121 ctggtttgaaacaga--aatggcaatggccatagataatggagtccgctgaaattagagaacaaaacct 48865055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 156 - 214
Target Start/End: Complemental strand, 7801548 - 7801490
Alignment:
Q  156 tgaaattagagaacaaaacctttttccttcaatatgcataaactcatcagattaattta 214  Q
    ||||||||||||||||||||||| |||||||| ||||||||||| || |||||| ||||    
T  7801548 tgaaattagagaacaaaacctttctccttcaacatgcataaactaattagattatttta 7801490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 177
Target Start/End: Complemental strand, 48853735 - 48853665
Alignment:
Q  108 ctggtttgaaa-cagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaacctt 177  Q
    ||||||||||| |||| ||||||||||||||||| |||||||  ||| || ||||||||||||||||||||    
T  48853735 ctggtttgaaaacagagaaatggcaagggccaaacttaatagtttccactaaaattagagaacaaaacctt 48853665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 177
Target Start/End: Original strand, 45370972 - 45371046
Alignment:
Q  103 cttttctggtttgaaacagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaacctt 177  Q
    |||| |||||||||||  || | ||||||||||  |||||||||||||||| || || |||||||||||||||||    
T  45370972 ctttcctggtttgaaattgagagatggcaagggataaagttaatagagtccactaaatttagagaacaaaacctt 45371046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 176 - 247
Target Start/End: Original strand, 7772880 - 7772946
Alignment:
Q  176 tttttccttcaatatgcataaactcatcagattaatttattttatcatataaaacaatttcagacagtgaca 247  Q
    |||||||||||| ||| ||||||||||||||||||||||      |||||||||||||||||  ||||||||    
T  7772880 tttttccttcaacatgtataaactcatcagattaatttac-----catataaaacaatttcaagcagtgaca 7772946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 7814384 - 7814330
Alignment:
Q  160 attagagaacaaaacctttttccttcaatatgcataaactcatcagattaattta 214  Q
    ||||||||||||||||||| ||||| || ||||||||||| || |||||| ||||    
T  7814384 attagagaacaaaacctttctccttgaacatgcataaactaattagattatttta 7814330  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 160 - 214
Target Start/End: Complemental strand, 7823876 - 7823822
Alignment:
Q  160 attagagaacaaaacctttttccttcaatatgcataaactcatcagattaattta 214  Q
    ||||||||||||||||||| ||||| || ||||||||||| || |||||| ||||    
T  7823876 attagagaacaaaacctttctccttgaacatgcataaactaattagattatttta 7823822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 142
Target Start/End: Complemental strand, 50681980 - 50681946
Alignment:
Q  108 ctggtttgaaacagataaatggcaagggccaaagt 142  Q
    ||||||||||||||| |||||||||||||||||||    
T  50681980 ctggtttgaaacagagaaatggcaagggccaaagt 50681946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 108 - 149
Target Start/End: Complemental strand, 7879432 - 7879391
Alignment:
Q  108 ctggtttgaaacagataaatggcaagggccaaagttaataga 149  Q
    ||||||||||||||| ||||| ||||||||||||||| ||||    
T  7879432 ctggtttgaaacagagaaatgacaagggccaaagttagtaga 7879391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 214
Target Start/End: Complemental strand, 50670013 - 50669943
Alignment:
Q  147 agagtccgctgaaattagagaacaaaac---ctttttccttcaatatgcataaactcatcagattaattta 214  Q
    ||||||| || |||||||||||||||||   ||||||||||||| ||||||||| | | ||||||| ||||    
T  50670013 agagtccactaaaattagagaacaaaaccttctttttccttcaacatgcataaattaaccagattagttta 50669943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 108 - 178
Target Start/End: Complemental strand, 48884987 - 48884917
Alignment:
Q  108 ctggtttgaaacagataaatggcaagggccaaagttaatagagtccgctgaaattagagaacaaaaccttt 178  Q
    |||||||||||||   ||||| ||||||||| ||||||||||||||  ||||||||||||||||| |||||    
T  48884987 ctggtttgaaacaatgaaatgacaagggccagagttaatagagtccattgaaattagagaacaaagccttt 48884917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University