View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_low_10 (Length: 256)
Name: NF20245_low_10
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_low_10 |
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| [»] scaffold0027 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 2 - 238
Target Start/End: Complemental strand, 8840143 - 8839907
Alignment:
| Q |
2 |
gtgtgaatgccgccagcggtggagggtccagaacggaagatgatgtgtctcagacggcggttgaacggatctccggcaacggatggagaagaggatgtcg |
101 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||||| ||||||||||||||||| | |
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| T |
8840143 |
gtgtgaatgtcgccagcggtggagggtccagaacggaagatgatatgtctcagacggtggttgaacggatctctggcaacagatggagaagaggatgttg |
8840044 |
T |
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| Q |
102 |
tcgacgacgtgagatctagatctaagagagaagagacatatggtggttactattggatggaggtgaggaggatgatggaagacgaaagagaaggtacacg |
201 |
Q |
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|||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
8840043 |
tcgacgacgtgagatctagatctaagagagaatagacatatggtggttactattggatggaggtgaggaggatgatggaagacgggagagaaggtacacg |
8839944 |
T |
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| Q |
202 |
aaaagaagagatgaagaagagggcattaatggtggtc |
238 |
Q |
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||||||||||||||||||||||| ||||||||||||| |
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| T |
8839943 |
aaaagaagagatgaagaagaggggattaatggtggtc |
8839907 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 5 - 180
Target Start/End: Original strand, 1295643 - 1295817
Alignment:
| Q |
5 |
tgaatgccgccagcggtggagggtccagaacggaagatgatgtgtctcagacggcggttgaacggatctccggcaacggatggagaagaggatgtcgtcg |
104 |
Q |
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| T |
1295643 |
tgaatgtcgccggcggtggatg-tctagaacgaacgatgatgtgtcttggacggcagctgaacggatctccggcaacggagggagaaaaggatggtgtca |
1295741 |
T |
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| Q |
105 |
acgacgtgagatctagatctaagagagaagagacatatggtggttactattggatggaggtgaggaggatgatgga |
180 |
Q |
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| T |
1295742 |
gcggtgtgaaatcaagatccgagagagaagagagtgatgatggttagtgttggacggaggtgatgaggatggtgga |
1295817 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 210
Target Start/End: Original strand, 44655534 - 44655746
Alignment:
| Q |
1 |
agtgtgaatgccgccagcggtggagggtccagaacggaagatgatgtgtctcagacggcggttgaacggatctccggcaacggatggagaagaggatgtc |
100 |
Q |
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|||||||||| ||||| | ||||||| |||||||||| ||||||| |||| |||||||| |||| |||| |||||| ||||| ||||||||||||| |
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| T |
44655534 |
agtgtgaatgtcgccaacagtggagg-tccagaacggtcgatgatgggtcttggacggcggctgaatggatatccggcgacggagggagaagaggatggt |
44655632 |
T |
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| Q |
101 |
gtcgacgacgtgagatctagatctaagagaga--agagacatatggtggttactattggatggaggtgaggaggatgat---ggaagacgaaagagaagg |
195 |
Q |
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| T |
44655633 |
gtcggcggc-tgatatctagatctgagagagaagagagagagatggtggttggtgttggacggaggtgaggaggatggtggaggaagacaatagagaagg |
44655731 |
T |
|
| Q |
196 |
tacacgaaaagaaga |
210 |
Q |
| |
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|||| | |||||||| |
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| T |
44655732 |
tacaaggaaagaaga |
44655746 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 31 - 180
Target Start/End: Original strand, 37356326 - 37356477
Alignment:
| Q |
31 |
agaacggaagatgatgtgtctcagacggcggttgaacggatctccggcaacggatggagaagaggatgtcgtcgacg--acgtgagatctagatctaaga |
128 |
Q |
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|||||||| |||||||||||| |||||||| |||||||||||||||| ||||| |||||| |||||| |||| || ||||| ||| |||||| ||| |
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| T |
37356326 |
agaacggacgatgatgtgtcttggacggcggctgaacggatctccggcgacggagggagaaaaggatggtgtcggcggtgcgtgaaatcaagatctgaga |
37356425 |
T |
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| Q |
129 |
gagaagagacatatggtggttactattggatggaggtgaggaggatgatgga |
180 |
Q |
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||||||||| |||||||| | | ||||| |||||||||||||||| |||| |
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| T |
37356426 |
gagaagagagtgatggtggtcagtgttggacggaggtgaggaggatggtgga |
37356477 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 48; Significance: 2e-18; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 2 - 210
Target Start/End: Complemental strand, 17708737 - 17708535
Alignment:
| Q |
2 |
gtgtgaatgccgccagcggtggagggtccagaacggaagatgatgtgtctcagacggcggttgaacggatctccggcaacggatggagaagaggatgtcg |
101 |
Q |
| |
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||||||||| |||| || ||||||| ||||||||||| ||||||| || ||||| ||||||||| |||||| ||||| ||||||||||||| | |
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| T |
17708737 |
gtgtgaatgtcgccggcagtggagg-tccagaacggatgatgatg-------gaaggcggatgaacggatatccggcgacggagggagaagaggatggtg |
17708646 |
T |
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| Q |
102 |
tcgacgacgtgagatctagatctaagagagaagagacatatggtggttactattggatggaggtgaggaggatgat---ggaagacgaaagagaaggtac |
198 |
Q |
| |
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||| || | ||| |||||||||| |||||||||||| | ||||||||| | ||||| ||||||||||| |||| | ||||||| | ||||||||||| |
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| T |
17708645 |
tcggcggc-tgatatctagatctgagagagaagagagagatggtggttcgtgttggacggaggtgaggaagatggtggaggaagacaagagagaaggtac |
17708547 |
T |
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| Q |
199 |
acgaaaagaaga |
210 |
Q |
| |
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| | |||||||| |
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| T |
17708546 |
aaggaaagaaga |
17708535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 2 - 76
Target Start/End: Complemental strand, 9372595 - 9372522
Alignment:
| Q |
2 |
gtgtgaatgccgccagcggtggagggtccagaacggaagatgatgtgtctcagacggcggttgaacggatctccg |
76 |
Q |
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||||||||| |||| ||| |||||| |||| |||||||||||||| ||||| |||||||| |||||||||||||| |
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| T |
9372595 |
gtgtgaatgtcgccggcgctggagg-tccaaaacggaagatgatgggtctcggacggcgggtgaacggatctccg |
9372522 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0027 (Bit Score: 34; Significance: 0.0000000004; HSPs: 1)
Name: scaffold0027
Description:
Target: scaffold0027; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 55 - 180
Target Start/End: Complemental strand, 144030 - 143906
Alignment:
| Q |
55 |
acggcggttgaacggatctccggcaacggatggagaagaggatgtcgtcgacgacgtgagatctagatctaagagagaagagacatatggtggttactat |
154 |
Q |
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||||||| |||||| || |||||| ||||| ||||||||||||| || | || | | | |||||||||| |||||||||||| | ||||||||| | | |
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| T |
144030 |
acggcggatgaacgaatatccggcgacggagggagaagaggatggtgtaggcggc-taatatctagatctgagagagaagagagagatggtggttggtgt |
143932 |
T |
|
| Q |
155 |
tggatggaggtgaggaggatgatgga |
180 |
Q |
| |
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| || |||||||||||||||| |||| |
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| T |
143931 |
tagacggaggtgaggaggatggtgga |
143906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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