View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_low_13 (Length: 218)
Name: NF20245_low_13
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_low_13 |
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| [»] chr5 (6 HSPs) |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 200; Significance: 1e-109; HSPs: 6)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 4 - 218
Target Start/End: Complemental strand, 21264506 - 21264291
Alignment:
| Q |
4 |
tggccagtataaggttcttctagcgacaataatttttcgaatttaatgctaatcatgctcgcatttgattttt-aaatactcacttaaaatggtaaagta |
102 |
Q |
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| T |
21264506 |
tggccagtataaggttcttctagtgacaataatttttcgaatttaatgctaatcatgctcgcatttgattttttaaatactcacttaaaatggtaaagta |
21264407 |
T |
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| Q |
103 |
atacgagaatatatgactaattttccataaattacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtc |
202 |
Q |
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| T |
21264406 |
atacgagaatgtatgactaattttccataaattacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtc |
21264307 |
T |
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| Q |
203 |
catcttttcttatttg |
218 |
Q |
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|||||||||||||||| |
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| T |
21264306 |
catcttttcttatttg |
21264291 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 94 - 218
Target Start/End: Original strand, 23021966 - 23022089
Alignment:
| Q |
94 |
ggtaaagtaatacgagaatatatgactaattttccataaattacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaa |
193 |
Q |
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|||||| ||||| ||| |||| |||||||||||| || |||||||| ||||| |||||||| |||||||||||||||| ||| |||||||||||||||| |
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| T |
23021966 |
ggtaaaataataagaggatat-tgactaattttctatctattacctccaaaatgtctccaacatttatgacaaaagcatcggtgagtggtttaacagaaa |
23022064 |
T |
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| Q |
194 |
cccattgtccatcttttcttatttg |
218 |
Q |
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| T |
23022065 |
tccactgtccatcttttcgtatttg |
23022089 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 133 - 218
Target Start/End: Complemental strand, 22928738 - 22928653
Alignment:
| Q |
133 |
attacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtccatcttttcttatttg |
218 |
Q |
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| T |
22928738 |
attacctccaaaatgtctccaacgtttatgacaaaagcatcggtgagtggtttaacagaaatccactgtccatcttttcgtatttg |
22928653 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 45; E-Value: 8e-17
Query Start/End: Original strand, 134 - 218
Target Start/End: Original strand, 22983345 - 22983429
Alignment:
| Q |
134 |
ttacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtccatcttttcttatttg |
218 |
Q |
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| T |
22983345 |
ttacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacagaaatccattgtccatcttttcttatttg |
22983429 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 132 - 218
Target Start/End: Complemental strand, 21250154 - 21250068
Alignment:
| Q |
132 |
aattacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtccatcttttcttatttg |
218 |
Q |
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| T |
21250154 |
aattacctccaacatatctccaatgttgatgacaaaagcattagggaggggttgaacaggaatccattgtccatcttttcttatttg |
21250068 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 134 - 218
Target Start/End: Complemental strand, 22933357 - 22933273
Alignment:
| Q |
134 |
ttacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtccatcttttcttatttg |
218 |
Q |
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| T |
22933357 |
ttacctccaacatgtctccaaggttgacgacgaaagcattagggaggggttgaacaggaatccattgtccatcttttcttatttg |
22933273 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 46; Significance: 2e-17; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 133 - 218
Target Start/End: Original strand, 23204 - 23289
Alignment:
| Q |
133 |
attacctcgaaaatatctccaacgtttatgacaaaagcattggtcagtggtttaacagaaacccattgtccatcttttcttatttg |
218 |
Q |
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|||||||| || || ||||||| ||||| |||||||||| || |||||||||||||||| |||||||||||||||||||||||| |
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| T |
23204 |
attacctctaacatgtctccaatgtttacgacaaaagcaccggcgagtggtttaacagaaatccattgtccatcttttcttatttg |
23289 |
T |
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