View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_low_14 (Length: 203)
Name: NF20245_low_14
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_low_14 |
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Alignment Details
Target: chr7 (Bit Score: 137; Significance: 1e-71; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 137; E-Value: 1e-71
Query Start/End: Original strand, 27 - 187
Target Start/End: Complemental strand, 10688265 - 10688105
Alignment:
| Q |
27 |
tgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaata |
126 |
Q |
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| T |
10688265 |
tgtatggaaaatatacaaggagaataattgtgcaagtgttgtgggattggcaatttccaaagaacttgaactgaggttcttgatttggcaatttccaata |
10688166 |
T |
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| Q |
127 |
ttcatagatccttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgt |
187 |
Q |
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| T |
10688165 |
ttcatagatgcttgatcaactcattatttctagatataggaattcatgtcagcttgaatgt |
10688105 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 124; Significance: 5e-64; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 124; E-Value: 5e-64
Query Start/End: Original strand, 1 - 187
Target Start/End: Complemental strand, 5445003 - 5444816
Alignment:
| Q |
1 |
tcagaaaagttggggaatgaggaaagtgtatggaaaatatacaaggagaataattgtgcaagtgttgtggtattggcaatttccaaagaacttgaactga |
100 |
Q |
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| T |
5445003 |
tcagaaaagttggggaatgaggaaggagtatggaaaatatacacggagaataattgggcaagtgttgagggattggcaatttccaaagaacttggactga |
5444904 |
T |
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| Q |
101 |
ggtt-cttgatttggcaatttccaatattcatagatccttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgt |
187 |
Q |
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| T |
5444903 |
ggttgagggatttggcaatttcccatattcattgatccttgatcaactcattatttctacacataggaattcatgtcagcttgaatgt |
5444816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 122 - 187
Target Start/End: Original strand, 5441376 - 5441441
Alignment:
| Q |
122 |
caatattcatagatccttgatcaactcactgtttctacacataggaattcatgtcagcttgaatgt |
187 |
Q |
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| T |
5441376 |
caatattcattgatccttgatcaactcattatttctacacattggaattcatgtcagcttgaatgt |
5441441 |
T |
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