View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20245_low_2 (Length: 757)

Name: NF20245_low_2
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20245_low_2
NF20245_low_2
[»] chr8 (3 HSPs)
chr8 (10-739)||(41786465-41787195)
chr8 (96-143)||(5870396-5870443)
chr8 (89-143)||(40151580-40151634)
[»] chr3 (3 HSPs)
chr3 (89-140)||(10020172-10020223)
chr3 (99-143)||(32930742-32930787)
chr3 (99-151)||(31264811-31264862)
[»] chr4 (3 HSPs)
chr4 (88-156)||(13668830-13668898)
chr4 (88-156)||(13681687-13681755)
chr4 (89-159)||(9694389-9694458)
[»] chr7 (1 HSPs)
chr7 (92-151)||(7192763-7192822)
[»] chr2 (6 HSPs)
chr2 (89-159)||(17229213-17229283)
chr2 (95-140)||(31053450-31053495)
chr2 (86-126)||(31203167-31203207)
chr2 (89-156)||(13365883-13365950)
chr2 (69-163)||(2336649-2336743)
chr2 (89-118)||(5788863-5788892)
[»] chr6 (1 HSPs)
chr6 (89-140)||(20117199-20117250)
[»] chr5 (1 HSPs)
chr5 (88-135)||(19910580-19910627)
[»] chr1 (1 HSPs)
chr1 (116-178)||(47493820-47493882)
[»] scaffold0159 (1 HSPs)
scaffold0159 (89-118)||(33236-33265)
[»] scaffold0036 (1 HSPs)
scaffold0036 (88-133)||(49428-49473)


Alignment Details
Target: chr8 (Bit Score: 631; Significance: 0; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 631; E-Value: 0
Query Start/End: Original strand, 10 - 739
Target Start/End: Complemental strand, 41787195 - 41786465
Alignment:
Q  10 aagaatattctcaagtttgtgttgtggcaagcgtgagatgagttagtaatgtcatattgattgattagtaaagtgaagattgaacaacatataagtgaga 109  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41787195 aagaatattctgaagtttgtgttgtggcaagcgtgagatgagttagtaatgtcatattgattgattagtaaagtgaagattgaacaacatataagtgaga 41787096  T
Q  110 tgactcataaactcaatatcttaagattttgagtcaagatgtagtgttcaactcgcttatataattgctatttctccaatagaggatgatcctgtcgact 209  Q
    ||||||||||||||||| ||||||  ||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||    
T  41787095 tgactcataaactcaatgtcttaaatttttgagtcaagatgtagtgttcaacttgcttatataattgttatttctccaatagaggatgatcttgtcgact 41786996  T
Q  210 ccctaattacaacgagttatttaagaagacattaagtattgtatcaaatccttatttatcactaattacatatacaannnnnnnnagaaacactaattac 309  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        |||||||||||||||    
T  41786995 ccctaattacaacgagttatttaagaagacattaagtattgtatcaaatccttatttatcactaattacatatacaattttttttagaaacactaattac 41786896  T
Q  310 acctaaagtatgataactattcagatgagtgatatttgaacaacgaaaacatataataattttttatatacacctaaagtatgtgttagtttgattaaag 409  Q
    |||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||    
T  41786895 acctaaagtatgataactattcagatgagtgatatttgaacaacgaaagcatataacaattttttatatacacctaaagtatgtgttagtttgattaaag 41786796  T
Q  410 aagagaggaacaaattgttagtaaattgacaactgtatnnnnnnnntaccgtattagacaagttttagattgtcgaaataactcttttctcaactattaa 509  Q
    ||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41786795 aagagaggaacaaattgttagtaaattgacaactgtataaaaaaaataccgtattagacaagttttagattgtcgaaataactcttttctcaactattaa 41786696  T
Q  510 -ttaagggaaaattctaaagcatatcacagtgtctcttccacactctattttctcacaatgtcactaatatgttaaatttcgaagagttacattaaataa 608  Q
     |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  41786695 attaagggaaaattctaaagcatatcacagtgtatcttccacactctattttctcacaatgtcactaatatgttaaatttcgaagagttacattacataa 41786596  T
Q  609 aagaaatatttgaaaatatcaattgatgaggatgagagtcaggatacaaacatcactttagttgtaagtattactattctattctataaaccattatttg 708  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  41786595 aagaaatatttgaaaatatcaattgatgaggatgagagtcaggatacaaacatcactttagttgtaagtattactattctattctataaaccattatttg 41786496  T
Q  709 gaaatattaaaactgttttgcagatttggat 739  Q
    |||||||||||||||||||||||||||||||    
T  41786495 gaaatattaaaactgttttgcagatttggat 41786465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 143
Target Start/End: Original strand, 5870396 - 5870443
Alignment:
Q  96 acatataagtgagatgactcataaactcaatatcttaagattttgagt 143  Q
    ||||||||||||||  || ||||||||||||||||||| |||||||||    
T  5870396 acatataagtgagagaacccataaactcaatatcttaaaattttgagt 5870443  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 143
Target Start/End: Complemental strand, 40151634 - 40151580
Alignment:
Q  89 ttgaacaacatataagtgagatgactcataaactcaatatcttaagattttgagt 143  Q
    ||||||||||||||||||| |||| ||||  ||||||||||||||  ||||||||    
T  40151634 ttgaacaacatataagtgaaatgattcatttactcaatatcttaatgttttgagt 40151580  T

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Target: chr3 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 10020172 - 10020223
Alignment:
Q  89 ttgaacaacatataagtgagatgactcataaactcaatatcttaagattttg 140  Q
    |||||||||||||||||||||||||||||| ||| |||||||||||||||||    
T  10020172 ttgaacaacatataagtgagatgactcatatacttaatatcttaagattttg 10020223  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 99 - 143
Target Start/End: Original strand, 32930742 - 32930787
Alignment:
Q  99 tataagtgagatgactcataaactcaatatctta-agattttgagt 143  Q
    |||||||||||||||||||||||||||| ||||| |||||||||||    
T  32930742 tataagtgagatgactcataaactcaatgtcttagagattttgagt 32930787  T

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Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 99 - 151
Target Start/End: Original strand, 31264811 - 31264862
Alignment:
Q  99 tataagtgagatgactcataaactcaatatcttaagattttgagtcaagatgt 151  Q
    ||||| |||||||||||||||||||||||| |||||||||| ||| |||||||    
T  31264811 tataaatgagatgactcataaactcaatat-ttaagatttttagtaaagatgt 31264862  T

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Target: chr4 (Bit Score: 37; Significance: 0.00000000002; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 13668898 - 13668830
Alignment:
Q  88 attgaacaacatataagtgagatgactcataaactcaatatcttaagattttgagtcaagatgtagtgt 156  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||||| |||||||||  ||| |||||||    
T  13668898 attgaacaacatataagtgagatgactaatatactcaaagtcttaatattttgagtttagacgtagtgt 13668830  T

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Target: chr4; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 88 - 156
Target Start/End: Complemental strand, 13681755 - 13681687
Alignment:
Q  88 attgaacaacatataagtgagatgactcataaactcaatatcttaagattttgagtcaagatgtagtgt 156  Q
    ||||||||||||||||||||||||||| ||| ||||||  |||||| |||||||||  ||| |||||||    
T  13681755 attgaacaacatataagtgagatgactaatatactcaaagtcttaatattttgagtttagacgtagtgt 13681687  T

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Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 9694458 - 9694389
Alignment:
Q  89 ttgaacaacatataagtgagatgactcataaactcaatatcttaagattttgagtcaagatgtagtgttca 159  Q
    ||||||| | ||||||||||||||||||||| |  ||| |||||||||||||||| || |||| |||||||    
T  9694458 ttgaacatcttataagtgagatgactcataatc-aaatgtcttaagattttgagttaaaatgtggtgttca 9694389  T

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Target: chr7 (Bit Score: 36; Significance: 0.00000000007; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 92 - 151
Target Start/End: Original strand, 7192763 - 7192822
Alignment:
Q  92 aacaacatataagtgagatgactcataaactcaatatcttaagattttgagtcaagatgt 151  Q
    |||||||||||||||| || | ||||||||||||| ||||||| |||||||| |||||||    
T  7192763 aacaacatataagtgaaataaatcataaactcaatgtcttaaggttttgagtaaagatgt 7192822  T

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Target: chr2 (Bit Score: 35; Significance: 0.0000000003; HSPs: 6)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 89 - 159
Target Start/End: Complemental strand, 17229283 - 17229213
Alignment:
Q  89 ttgaacaacatataagtgagatgactcataaactcaatatcttaagattttgagtcaagatgtagtgttca 159  Q
    ||||||||||||||||||| ||||| ||||||||| ||| |||||| |||| | | ||||||| |||||||    
T  17229283 ttgaacaacatataagtgaaatgacccataaactcgataccttaaggttttaaattaagatgtggtgttca 17229213  T

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Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 140
Target Start/End: Original strand, 31053450 - 31053495
Alignment:
Q  95 aacatataagtgagatgactcataaactcaatatcttaagattttg 140  Q
    ||||||||||||||||||| |||||||||||||||| ||| |||||    
T  31053450 aacatataagtgagatgacccataaactcaatatctcaaggttttg 31053495  T

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Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 86 - 126
Target Start/End: Complemental strand, 31203207 - 31203167
Alignment:
Q  86 agattgaacaacatataagtgagatgactcataaactcaat 126  Q
    |||||||||||| |||||| |||||||||||||||||||||    
T  31203207 agattgaacaacttataagagagatgactcataaactcaat 31203167  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 156
Target Start/End: Original strand, 13365883 - 13365950
Alignment:
Q  89 ttgaacaacatataagtgagatgactcataaactcaatatcttaagattttgagtcaagatgtagtgt 156  Q
    ||||||||||||||| ||||||||  ||||||||||||   ||||| ||||| |||||||||| ||||    
T  13365883 ttgaacaacatataaatgagatgatccataaactcaatgcattaaggttttgtgtcaagatgtggtgt 13365950  T

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Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 69 - 163
Target Start/End: Original strand, 2336649 - 2336743
Alignment:
Q  69 attgattagtaaagtgaagattgaacaacatataagtgagatgactcataaactcaatatcttaagattttgagtcaagatgtagtgttcaactc 163  Q
    |||| |||| |||||| || |||||||   ||||||||||| ||| |||||| |||||  |||||||||||| || ||||||| |||| ||||||    
T  2336649 attgcttagaaaagtggaggttgaacactttataagtgagaggacccataaattcaatgccttaagattttgggttaagatgtggtgtccaactc 2336743  T

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Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 5788892 - 5788863
Alignment:
Q  89 ttgaacaacatataagtgagatgactcata 118  Q
    ||||||||||||||||||||||||||||||    
T  5788892 ttgaacaacatataagtgagatgactcata 5788863  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 89 - 140
Target Start/End: Original strand, 20117199 - 20117250
Alignment:
Q  89 ttgaacaacatataagtgagatgactcataaactcaatatcttaagattttg 140  Q
    |||||||||||||||||||||  ||||||||| ||||| ||||||| |||||    
T  20117199 ttgaacaacatataagtgagagtactcataaattcaatgtcttaaggttttg 20117250  T

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Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 88 - 135
Target Start/End: Complemental strand, 19910627 - 19910580
Alignment:
Q  88 attgaacaacatataagtgagatgactcataaactcaatatcttaaga 135  Q
    ||||||||||||||||||||||||| ||||| ||| |||| |||||||    
T  19910627 attgaacaacatataagtgagatgagtcatatacttaataccttaaga 19910580  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 116 - 178
Target Start/End: Original strand, 47493820 - 47493882
Alignment:
Q  116 ataaactcaatatcttaagattttgagtcaagatgtagtgttcaactcgcttatataattgct 178  Q
    |||||||||||||||||| ||||||||| ||||| |   || |||||| ||||||||||||||    
T  47493820 ataaactcaatatcttaaaattttgagttaagatattacgtccaactcacttatataattgct 47493882  T

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Target: scaffold0159 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0159
Description:

Target: scaffold0159; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 89 - 118
Target Start/End: Complemental strand, 33265 - 33236
Alignment:
Q  89 ttgaacaacatataagtgagatgactcata 118  Q
    ||||||||||||||||||||||||||||||    
T  33265 ttgaacaacatataagtgagatgactcata 33236  T

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Target: scaffold0036 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: scaffold0036
Description:

Target: scaffold0036; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 88 - 133
Target Start/End: Complemental strand, 49473 - 49428
Alignment:
Q  88 attgaacaacatataagtgagatgactcataaactcaatatcttaa 133  Q
    ||||| ||||||||||||||||||||| ||| ||||||| ||||||    
T  49473 attgagcaacatataagtgagatgactaatatactcaatgtcttaa 49428  T

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