View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20245_low_3 (Length: 548)

Name: NF20245_low_3
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20245_low_3
NF20245_low_3
[»] chr6 (19 HSPs)
chr6 (6-530)||(28142673-28143197)
chr6 (16-130)||(2170590-2170704)
chr6 (20-109)||(2187926-2188015)
chr6 (11-75)||(26805550-26805614)
chr6 (16-116)||(28246413-28246513)
chr6 (15-116)||(28239434-28239535)
chr6 (17-75)||(27715568-27715626)
chr6 (13-89)||(26659005-26659081)
chr6 (13-89)||(26764976-26765052)
chr6 (15-103)||(28152277-28152365)
chr6 (17-89)||(28789400-28789472)
chr6 (12-75)||(26887821-26887884)
chr6 (12-75)||(27681986-27682049)
chr6 (11-89)||(26952633-26952711)
chr6 (365-439)||(28154915-28154989)
chr6 (11-88)||(26876588-26876665)
chr6 (11-75)||(27590197-27590261)
chr6 (16-92)||(28525283-28525359)
chr6 (379-431)||(29662694-29662746)
[»] scaffold0286 (1 HSPs)
scaffold0286 (16-130)||(12557-12671)
[»] scaffold0038 (2 HSPs)
scaffold0038 (16-116)||(46575-46675)
scaffold0038 (15-116)||(39596-39697)
[»] scaffold0019 (1 HSPs)
scaffold0019 (16-116)||(55255-55355)
[»] chr1 (1 HSPs)
chr1 (11-89)||(265379-265457)
[»] scaffold0349 (1 HSPs)
scaffold0349 (17-75)||(16319-16377)
[»] chr4 (4 HSPs)
chr4 (16-89)||(18652573-18652646)
chr4 (16-89)||(18676655-18676728)
chr4 (16-89)||(18686698-18686771)
chr4 (16-89)||(18721169-18721242)
[»] scaffold0419 (1 HSPs)
scaffold0419 (17-89)||(10550-10622)
[»] scaffold0277 (2 HSPs)
scaffold0277 (17-89)||(1761-1833)
scaffold0277 (17-89)||(10727-10799)
[»] chr2 (1 HSPs)
chr2 (17-75)||(17990204-17990262)


Alignment Details
Target: chr6 (Bit Score: 513; Significance: 0; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 513; E-Value: 0
Query Start/End: Original strand, 6 - 530
Target Start/End: Original strand, 28142673 - 28143197
Alignment:
Q  6 aggagcagagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttcttt 105  Q
    |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28142673 aggaacagaaaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttcttt 28142772  T
Q  106 gctactaaatccataaataacaagctccctgacagtcactttctttcgttgagagtcaatggcgttgcatgggctcttgatcatcgatggaacagaacaa 205  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  28142773 gctactaaatccataaataacaagctccctgacagtcactttctttcgttaagagtcaatggcgttgcatgggctcttgatcatcgatggaacagaacaa 28142872  T
Q  206 ataaatatcatcctactttaatcgaggtgaaaccggaccatacttatctactggatatgcaattgcaagacaaagaactcaattataatttggatgaagc 305  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28142873 ataaatatcatcctactttaatcgaggtgaaaccggaccatacttatctactggatatgcaattgcaagacaaagaactcaattataatttggatgaagc 28142972  T
Q  306 actttcaaaagatgaatggatccgtgtagaggttaggtgtgatggctcgatgatgaagtcactccttacaaattgtggaattcatgtattcaagcagaaa 405  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28142973 actttcaaaagatgaatggatccgtgtagaggttaggtgtgatggctcgatgatgaagtcactccttacaaattgtggaattcatgtattcaagcagaaa 28143072  T
Q  406 agcagcatgaatgatattcgattcactgatccttacaaactaaattccgaagttgttcaagcttcttggatttagactctggattggattgagactcata 505  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28143073 agcagcatgaatgatattcgattcactgatccttacaaactaaattccgaagttgttcaagcttcttggatttagactctggattggattgagactcata 28143172  T
Q  506 atcatgaatcattccttggtggaaa 530  Q
    |||||||||||||||||||||||||    
T  28143173 atcatgaatcattccttggtggaaa 28143197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 130
Target Start/End: Complemental strand, 2170704 - 2170590
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 115  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||    
T  2170704 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaat 2170605  T
Q  116 ccataaataacaagc 130  Q
    | ||  |||||||||    
T  2170604 caatggataacaagc 2170590  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 20 - 109
Target Start/End: Original strand, 2187926 - 2188015
Alignment:
Q  20 ttccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgcta 109  Q
    |||||||||||||||| ||||||||| |||||||||||||| |||| ||||||||||  | |||||||||||| ||| ||||| ||||||    
T  2187926 ttccagagtggtttgatcaccaaagcgagggaccatcaatttctttttggtttcgtggcaggttcccttccatagctctcttcgttgcta 2188015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 11 - 75
Target Start/End: Original strand, 26805550 - 26805614
Alignment:
Q  11 cagagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 75  Q
    ||||| |||| ||||| ||||||||||||||||||||||||||  ||||| ||||||||||||||    
T  26805550 cagaggggataccagattggtttgagcaccaaagcaagggacccacaatttctttctggtttcgt 26805614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 28246413 - 28246513
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 115  Q
    ||||||||||| |||||||| |||||||||| |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| |||||||||    
T  28246413 aggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaat 28246512  T
Q  116 c 116  Q
    |    
T  28246513 c 28246513  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 28239434 - 28239535
Alignment:
Q  15 gaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaa 114  Q
    ||||||||||||||||||||| || |||| || |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| ||||||||    
T  28239434 gaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaa 28239533  T
Q  115 tc 116  Q
    ||    
T  28239534 tc 28239535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 27715626 - 27715568
Alignment:
Q  17 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 75  Q
    |||| ||||| ||||||||||||||||||| ||||||  ||||| ||||||||||||||    
T  27715626 ggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt 27715568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 26659005 - 26659081
Alignment:
Q  13 gagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    |||||||| ||||| ||||| |||||||||| || ||||| | || || |||||||||||||| ||||| |||||||    
T  26659005 gagaggatcccagattggttcgagcaccaaatcaggggacaaacagtttctttctggtttcgtaaaaagatcccttc 26659081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 13 - 89
Target Start/End: Original strand, 26764976 - 26765052
Alignment:
Q  13 gagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    |||||||| ||||| ||||| |||||||||| || ||||| | || || |||||||||||||| ||||| |||||||    
T  26764976 gagaggatcccagattggttcgagcaccaaatcaggggacaaacagtttctttctggtttcgtaaaaagatcccttc 26765052  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 15 - 103
Target Start/End: Original strand, 28152277 - 28152365
Alignment:
Q  15 gaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttct 103  Q
    |||||||||||||| |||| ||||||| |||| | ||| | ||||| |||||||||||| | | ||| |||||||||| ||| ||||||    
T  28152277 gaggattccagagtcgtttaagcaccagagcacgagacaaacaatttctttctggtttcataacaagctcccttccattgctctcttct 28152365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 28789400 - 28789472
Alignment:
Q  17 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    |||||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  28789400 ggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 28789472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 26887821 - 26887884
Alignment:
Q  12 agagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 75  Q
    |||| |||||||||| ||||||||||||||||||| |||||   || || ||||||||||||||    
T  26887821 agaggggattccagattggtttgagcaccaaagcaggggacacacactttctttctggtttcgt 26887884  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 12 - 75
Target Start/End: Original strand, 27681986 - 27682049
Alignment:
Q  12 agagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 75  Q
    |||| |||| ||||| ||||||||||||||||||| ||||||   |||| ||||||||||||||    
T  27681986 agaggggataccagattggtttgagcaccaaagcaggggacccataatttctttctggtttcgt 27682049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 11 - 89
Target Start/End: Original strand, 26952633 - 26952711
Alignment:
Q  11 cagagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    ||||| |||||||||| |||||||||||||||| || ||||    ||||| ||||||||||||||  |||| |||||||    
T  26952633 cagaggggattccagattggtttgagcaccaaaccaggggagacacaatttctttctggtttcgtagaaagatcccttc 26952711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 365 - 439
Target Start/End: Original strand, 28154915 - 28154989
Alignment:
Q  365 cactccttacaaattgtggaattcatgtattcaagcagaaaagcagcatgaatgatattcgattcactgatcctt 439  Q
    ||||| ||||| ||| |||||| |||||||| ||||||||||| ||||||   ||||||| |||||| |||||||    
T  28154915 cactcgttacagattttggaatccatgtattaaagcagaaaagtagcatggcggatattcaattcaccgatcctt 28154989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 11 - 88
Target Start/End: Original strand, 26876588 - 26876665
Alignment:
Q  11 cagagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttccctt 88  Q
    ||||| |||||||||| |||||  | ||||||| || ||||| | ||||| |||||||||||||| ||||| ||||||    
T  26876588 cagaggggattccagactggttccaacaccaaatcacgggacaaacaatttctttctggtttcgtaaaaagatccctt 26876665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 11 - 75
Target Start/End: Complemental strand, 27590261 - 27590197
Alignment:
Q  11 cagagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 75  Q
    ||||| |||| ||||| ||||||||||||||||||| ||||    ||||| ||||||||||||||    
T  27590261 cagaggggataccagattggtttgagcaccaaagcaggggagacacaatttctttctggtttcgt 27590197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 16 - 92
Target Start/End: Original strand, 28525283 - 28525359
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccat 92  Q
    |||||||||||||||||||| ||||||| || |||||   ||||| |||| ||||||||| | ||  ||||||||||    
T  28525283 aggattccagagtggtttgatcaccaaaacatgggacatacaatttctttttggtttcgtaacaacctcccttccat 28525359  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 379 - 431
Target Start/End: Complemental strand, 29662746 - 29662694
Alignment:
Q  379 tgtggaattcatgtattcaagcagaaaagcagcatgaatgatattcgattcac 431  Q
    |||||||| |||||||| ||  ||||||| | |||||||||||||||||||||    
T  29662746 tgtggaatccatgtattgaaagagaaaagtaacatgaatgatattcgattcac 29662694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0286 (Bit Score: 67; Significance: 2e-29; HSPs: 1)
Name: scaffold0286
Description:

Target: scaffold0286; HSP #1
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 16 - 130
Target Start/End: Original strand, 12557 - 12671
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 115  Q
    |||||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||| | |||||||||||| ||| ||||| |||||| |||||    
T  12557 aggattccagagtggtttgatcaacaaagcaagggaccatcaatttctttctggtttcgtgacaggttcccttccatagctctcttcgttgctagtaaat 12656  T
Q  116 ccataaataacaagc 130  Q
    | ||  |||||||||    
T  12657 caatggataacaagc 12671  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: scaffold0038
Description:

Target: scaffold0038; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 116
Target Start/End: Original strand, 46575 - 46675
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 115  Q
    ||||||||||| |||||||| |||||||||| |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| |||||||||    
T  46575 aggattccagattggtttgatcaccaaagcatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaat 46674  T
Q  116 c 116  Q
    |    
T  46675 c 46675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0038; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 15 - 116
Target Start/End: Original strand, 39596 - 39697
Alignment:
Q  15 gaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaa 114  Q
    ||||||||||||||||||||| || |||| || |||||   ||||| |||| ||||||||| | ||| |||||||||||||| |||  ||| ||||||||    
T  39596 gaggattccagagtggtttgatcatcaaaacatgggacatacaatttctttttggtttcgtaacaagctcccttccatggctctctgtttttctactaaa 39695  T
Q  115 tc 116  Q
    ||    
T  39696 tc 39697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0019 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 1)
Name: scaffold0019
Description:

Target: scaffold0019; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 16 - 116
Target Start/End: Complemental strand, 55355 - 55255
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttccatggctatcttctttgctactaaat 115  Q
    |||||||||||||||||||||||||||| || |||||   | ||| |||| ||||||||| | ||| ||||||||| |||| |||| ||| |||||||||    
T  55355 aggattccagagtggtttgagcaccaaaacatgggacatacgatttctttttggtttcgtaacaagctcccttccacggctctctttttttctactaaat 55256  T
Q  116 c 116  Q
    |    
T  55255 c 55255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000008; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000008
Query Start/End: Original strand, 11 - 89
Target Start/End: Complemental strand, 265457 - 265379
Alignment:
Q  11 cagagaggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    ||||| |||| ||||| ||||||||||||||||||||||||    ||||| |||||||||||||| ||||| |||||||    
T  265457 cagaggggataccagattggtttgagcaccaaagcaagggaaacacaatttctttctggtttcgtaaaaagatcccttc 265379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0349 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: scaffold0349
Description:

Target: scaffold0349; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 17 - 75
Target Start/End: Original strand, 16319 - 16377
Alignment:
Q  17 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 75  Q
    |||| ||||| ||||||||||||||||||| ||||||  ||||| ||||||||||||||    
T  16319 ggataccagattggtttgagcaccaaagcaggggacccacaatttctttctggtttcgt 16377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 34; Significance: 0.0000000008; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 18652646 - 18652573
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    ||||||||||| ||||| ||||| ||||||| ||| | ||||||| |||||||||| ||| ||||| |||||||    
T  18652646 aggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttccgtaaaaagatcccttc 18652573  T

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Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 18676728 - 18676655
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    ||||||||||| ||||| ||||| ||||||| ||| | ||||||| |||||||||| ||| ||||| |||||||    
T  18676728 aggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttccgtaaaaagatcccttc 18676655  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 18686771 - 18686698
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    ||||||||||| ||||| ||||| ||||||| ||| | ||||||| ||||||||||  || ||||| |||||||    
T  18686771 aggattccagattggttcgagcatcaaagcaggggtcaatcaatttctttctggttctgtaaaaagatcccttc 18686698  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 16 - 89
Target Start/End: Complemental strand, 18721242 - 18721169
Alignment:
Q  16 aggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    ||||||||||| ||||| ||||||||||||| ||| |  |||||| ||||||||||  || ||||| |||||||    
T  18721242 aggattccagattggttcgagcaccaaagcaggggtcattcaatttctttctggttctgtaaaaagatcccttc 18721169  T

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Target: scaffold0419 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: scaffold0419
Description:

Target: scaffold0419; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Original strand, 10550 - 10622
Alignment:
Q  17 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    |||||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  10550 ggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 10622  T

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Target: scaffold0277 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: scaffold0277
Description:

Target: scaffold0277; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 1833 - 1761
Alignment:
Q  17 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    |||||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  1833 ggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 1761  T

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Target: scaffold0277; HSP #2
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 17 - 89
Target Start/End: Complemental strand, 10799 - 10727
Alignment:
Q  17 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgtgaaaagttcccttc 89  Q
    |||||||||| ||||| ||||||||||||| ||||    ||||| |||||||||||||| ||||| |||||||    
T  10799 ggattccagattggttcgagcaccaaagcaggggagacacaatttctttctggtttcgtaaaaagatcccttc 10727  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000005; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 17 - 75
Target Start/End: Complemental strand, 17990262 - 17990204
Alignment:
Q  17 ggattccagagtggtttgagcaccaaagcaagggaccatcaattactttctggtttcgt 75  Q
    |||||||||| ||||||||||||||||||| ||| |   ||||| ||||||||||||||    
T  17990262 ggattccagattggtttgagcaccaaagcagggggcacacaatttctttctggtttcgt 17990204  T

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