View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20245_low_8 (Length: 311)
Name: NF20245_low_8
Description: NF20245
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20245_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 265; Significance: 1e-148; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 265; E-Value: 1e-148
Query Start/End: Original strand, 17 - 295
Target Start/End: Original strand, 11009002 - 11009277
Alignment:
| Q |
17 |
atagagtatataaatcgcacaactgcatatatataccaaccatatttacagtgaggctggttatattgatcgagcactgcataccgaccatgtttacacc |
116 |
Q |
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| T |
11009002 |
atagagtatataaatcgcacaactgcatatatataccaaccatatttacagtgaggctggttatattgatcgagcactgcataccgaccatgtttacacc |
11009101 |
T |
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| Q |
117 |
gactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatcatcttcaacatcccaaga |
216 |
Q |
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| T |
11009102 |
gactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgccatcatcttcaacatccc---a |
11009198 |
T |
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| Q |
217 |
agtgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagccaccaacatag |
295 |
Q |
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| T |
11009199 |
agtgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagccaccaacatag |
11009277 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 1e-41
Query Start/End: Original strand, 118 - 295
Target Start/End: Original strand, 11034504 - 11034690
Alignment:
| Q |
118 |
actgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttg---------ccatcatcttcaaca |
208 |
Q |
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| T |
11034504 |
actgttgagccaagaaagttcaaatccataaaacatctcacgacggatatccgcgcaagaaatgttgttgttgttgtgatcagcaccatcatcttcaaca |
11034603 |
T |
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| Q |
209 |
tcccaagaagtgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagatttaccatagccaccaacatag |
295 |
Q |
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| T |
11034604 |
tccaaagaagtgagatacataaactgtatacgacacccatctcccagcccgaattccgacagagatttaccatagctaccaacatag |
11034690 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 64 - 236
Target Start/End: Original strand, 10975085 - 10975254
Alignment:
| Q |
64 |
acagtgaggctggttatattgatcgagcactgcataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacga |
163 |
Q |
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||||||| |||||||||||||||||||| |||||||||||||||| || || ||| ||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
10975085 |
acagtgaagctggttatattgatcgagctctgcataccgaccatgattgcaaatactattgagccaagaaaattcaaatccataatacatcatacgacgg |
10975184 |
T |
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| Q |
164 |
atgtctgtacaagaaatgttgttgatgttgccatcatcttcaacatcccaagaagtgagatacataaactcta |
236 |
Q |
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| T |
10975185 |
aagtccttgcaagaaatgttactgttgttgccatc---ttcaaaatttaaagatgtgagatacataaactcta |
10975254 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 64 - 295
Target Start/End: Original strand, 10905174 - 10905402
Alignment:
| Q |
64 |
acagtgaggctggttatattgatcgagcactgcataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacga |
163 |
Q |
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||||||| |||||||||||||||||||| |||||||| |||||| || | ||| ||||||||||||| ||||||||||||||||||| ||||||| |
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| T |
10905174 |
acagtgaagctggttatattgatcgagctgtgcataccaaccatgattgtaaatactattgagccaagaaaattcaaatccataatacatcatacgacgg |
10905273 |
T |
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| Q |
164 |
atgtctgtacaagaaatgttgttgatgttgccatcatcttcaacatcccaagaagtgagatacataaactctatatgacacccgtctcccaacccaaatt |
263 |
Q |
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| ||| | ||||||||||| || ||||| |||||||||| || |||| ||||||||||||||||||| | |||| | |||| |||| | |||| |
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| T |
10905274 |
aagtccttgcaagaaatgttactgttgttg---tcatcttcaaaatttaaagatgtgagatacataaactctacacgacaacagtctttcaacaccaatt |
10905370 |
T |
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| Q |
264 |
ccaacagagatttaccatagccaccaacatag |
295 |
Q |
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|| | |||||||| | |||| |||||||||| |
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| T |
10905371 |
ccgaaagagattttctgtagcgaccaacatag |
10905402 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 97 - 276
Target Start/End: Complemental strand, 11003436 - 11003260
Alignment:
| Q |
97 |
ataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttgatgttgcca |
196 |
Q |
| |
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||||| |||||||||||| |||| |||||||| |||||||||||||||||| ||||| ||||| |||| || |||||||||||||||| |||| ||| |
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| T |
11003436 |
ataccaaccatgtttacaaagactattgagccatgaaagttcaaatccataaaacatcatacgatgaatatccgtacaagaaatgttgt---tgtttcca |
11003340 |
T |
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| Q |
197 |
tcatcttcaacatcccaagaagtgagatacataaactctatatgacacccgtctcccaacccaaattccaacagagattt |
276 |
Q |
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| T |
11003339 |
ccatgcttaaaatcccaagatgtaagaaacatcaactctatacgacactcatctcccagagccaattccaaaagagattt |
11003260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 93 - 187
Target Start/End: Original strand, 10921612 - 10921706
Alignment:
| Q |
93 |
ctgcataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttg |
187 |
Q |
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||||||||| |||| |||||| ||||||||||||||||||||||||||||||| | ||| |||||| |||||||| || |||||||||||| |
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| T |
10921612 |
ctgcataccatccatctttacaaaaactgttgagccaagaaagttcaaatccataaaagatctcacgacggatgtctgtgcatgaaatgttgttg |
10921706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 97 - 187
Target Start/End: Complemental strand, 11000456 - 11000366
Alignment:
| Q |
97 |
ataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtacaagaaatgttgttg |
187 |
Q |
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| T |
11000456 |
ataccaaccatgtttacaaaggctattgagccatgaaagttcaaatccataaaacatcatacgacgaatatccgtgcaaaaaatgttgttg |
11000366 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 45 - 100
Target Start/End: Original strand, 11034422 - 11034477
Alignment:
| Q |
45 |
atatataccaaccatatttacagtgaggctggttatattgatcgagcactgcatac |
100 |
Q |
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| T |
11034422 |
atatataccaaccataattacagtgagcctggttattttgatcgagctccgcatac |
11034477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 10987954 - 10988078
Alignment:
| Q |
74 |
tggttatattgatcgagcactgcataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtac |
173 |
Q |
| |
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||||||| |||||| | | |||||| || | ||| |||||| |||| ||||||||||| | ||||||||||||| ||||| |||| ||||| || | |
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| T |
10987954 |
tggttattttgatcaaactctgcatgccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgc |
10988053 |
T |
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| Q |
174 |
aagaaatgttgttgatgttgccatc |
198 |
Q |
| |
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|||||||||| ||| |||||||||| |
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| T |
10988054 |
aagaaatgttattgttgttgccatc |
10988078 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 74 - 198
Target Start/End: Original strand, 11019122 - 11019246
Alignment:
| Q |
74 |
tggttatattgatcgagcactgcataccgaccatgtttacaccgactgttgagccaagaaagttcaaatccataatacatcctacgacgaatgtctgtac |
173 |
Q |
| |
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||||||| |||||| | | |||||| || | ||| |||||| |||| ||||||||||| | ||||||||||||| ||||| |||| ||||| || | |
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| T |
11019122 |
tggttattttgatcaaactctgcatgccaatcatctttacaaagactattgagccaagagacttcaaatccataagacatcatacggttgatgtccgtgc |
11019221 |
T |
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| Q |
174 |
aagaaatgttgttgatgttgccatc |
198 |
Q |
| |
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|||||||||| ||| |||||||||| |
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| T |
11019222 |
aagaaatgttattgttgttgccatc |
11019246 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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