View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20246_high_4 (Length: 436)
Name: NF20246_high_4
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20246_high_4 |
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Alignment Details
Target: chr3 (Bit Score: 105; Significance: 3e-52; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 105; E-Value: 3e-52
Query Start/End: Original strand, 238 - 372
Target Start/End: Complemental strand, 2615342 - 2615209
Alignment:
| Q |
238 |
atatataaaatacccacctcaactttgatatgaaagaatataagctgatannnnnnnacctctaataaaatatataagttggtactttacaaatcaaaac |
337 |
Q |
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| T |
2615342 |
atatataaaatacccacctcaactttgatatgaaagaatataagctgatatttttt-acctctaataaaatatataagttggtactttacaaatcaaaac |
2615244 |
T |
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| Q |
338 |
cctttgtgaaggactgcgagtctgaaaaatctcat |
372 |
Q |
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| T |
2615243 |
cctatgtgaaggactgcgagtctgaaaaatctcat |
2615209 |
T |
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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 211 - 281
Target Start/End: Original strand, 39453996 - 39454066
Alignment:
| Q |
211 |
aattaatcaacgaaactcaagccaaaaatatataaaatacccacctcaactttgatatgaaagaatataag |
281 |
Q |
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| T |
39453996 |
aattaattaacgaaactcaagccgaaaaaataaaatatacccaccttaactttgatataaaagaatataag |
39454066 |
T |
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