View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20246_high_6 (Length: 419)

Name: NF20246_high_6
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20246_high_6
NF20246_high_6
[»] chr1 (4 HSPs)
chr1 (17-407)||(28858513-28858910)
chr1 (371-419)||(28858466-28858514)
chr1 (191-298)||(47666415-47666522)
chr1 (140-181)||(28860975-28861016)
[»] chr7 (2 HSPs)
chr7 (191-296)||(27878615-27878720)
chr7 (186-289)||(32868300-32868403)
[»] chr4 (1 HSPs)
chr4 (214-298)||(52339221-52339305)
[»] chr3 (5 HSPs)
chr3 (206-298)||(20331695-20331787)
chr3 (206-298)||(20309514-20309606)
chr3 (242-288)||(26890847-26890893)
chr3 (222-298)||(26888352-26888428)
chr3 (191-288)||(20308278-20308376)
[»] chr5 (1 HSPs)
chr5 (191-236)||(33275269-33275314)


Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 17 - 407
Target Start/End: Complemental strand, 28858910 - 28858513
Alignment:
Q  17 cactaaacatataaattagtgtcctttattatttaactaggacactaaaattatttttcaaaggtaacaaaatttggtggtactca-------tctaaat 109  Q
    ||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       |||||||    
T  28858910 cactaaaaatataaattagtgtcctttgttatttaactaggacactaaaattatttttcaaaggtaacaaaatttggtggtactcaatactcatctaaat 28858811  T
Q  110 tttaaaaattaaatgatgttatcgtatagattgttgtatatattcaaacattctatatgtgatattgtttttcaaaaaggattatttatatgttaagtcc 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||    
T  28858810 tttaaaaattaaatgatgttatcgtatagattgttgtatatattcaaacattctatatgtgatattcttttttaaaaaggattatttatatgttaagtcc 28858711  T
Q  210 ttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggttcctacatcca 309  Q
     | |||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||| |||    
T  28858710 ctgtaaataggggttatttgagttttgttccattaatttgctaatcctttcaaatttgtcatgcaaatattaatcacttgacttttgattcctacaccca 28858611  T
Q  310 tttgatgatagacatgttattaatttgttgatttgacagagctgactggtcaagtcacttgttgactcatcaaaagcttatgtgagcgaaccaaaatt 407  Q
    ||||||||||||||||||| |||||| |||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||    
T  28858610 tttgatgatagacatgttactaatttattgatttggcagagctgactggtcaagtcacttgctgactcatcaaaagcttatgtgaacgaaccaaaatt 28858513  T

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Target: chr1; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 371 - 419
Target Start/End: Complemental strand, 28858514 - 28858466
Alignment:
Q  371 ttgactcatcaaaagcttatgtgagcgaaccaaaattctcatgaggctt 419  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||||    
T  28858514 ttgactcatcaaaagcttatgtgaacgaaccaaaattctcatgaggctt 28858466  T

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Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 191 - 298
Target Start/End: Complemental strand, 47666522 - 47666415
Alignment:
Q  191 ttatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttga 290  Q
    ||||||||| ||| ||||| |  |||||||||| | |||||||||  ||  ||||||| ||||| ||||||||||||   || |||||||||||||||||    
T  47666522 ttatttatacgtttagtccctgcaaataggggtcacttgagttttagtctctgaattttctaatcctttcaaatttgcgctgaaaatattaatcacttga 47666423  T
Q  291 cttttggt 298  Q
     |||||||    
T  47666422 gttttggt 47666415  T

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Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 140 - 181
Target Start/End: Complemental strand, 28861016 - 28860975
Alignment:
Q  140 ttgttgtatatattcaaacattctatatgtgatattgttttt 181  Q
    |||||| ||| ||||||||||||||||| |||||||||||||    
T  28861016 ttgttgcatacattcaaacattctatatttgatattgttttt 28860975  T

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Target: chr7 (Bit Score: 46; Significance: 4e-17; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 191 - 296
Target Start/End: Complemental strand, 27878720 - 27878615
Alignment:
Q  191 ttatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttga 290  Q
    ||||||||||| | ||||| | |||||||| || | |||||||||  ||| ||||||||||||| || | || |||| ||||||||||||||||||||||    
T  27878720 ttatttatatgcttagtccctgtaaataggtgtcacttgagttttcgtccgtgaatttgctaatcctctaaattttgccatgcaaatattaatcacttga 27878621  T
Q  291 cttttg 296  Q
    ||||||    
T  27878620 cttttg 27878615  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 186 - 289
Target Start/End: Complemental strand, 32868403 - 32868300
Alignment:
Q  186 aaggattatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatca 285  Q
    |||| |||| |||| ||| |||| ||| |||||||||| | |||||||||| |    | |||||||||| || |||| ||| ||||||||||||||||||    
T  32868403 aagggttatctatacgtttagtctttacaaataggggtcacttgagttttggttgtcgtatttgctaatcctatcaattttatcatgcaaatattaatca 32868304  T
Q  286 cttg 289  Q
    ||||    
T  32868303 cttg 32868300  T

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Target: chr4 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 214 - 298
Target Start/End: Original strand, 52339221 - 52339305
Alignment:
Q  214 aaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggt 298  Q
    |||||||||| ||| |||||||| ||| ||||||| ||||| |||||||  ||  | ||||||||||||||||||||||||||||    
T  52339221 aaataggggtcattagagttttggtccctgaatttactaatcctttcaatctttccctgcaaatattaatcacttgacttttggt 52339305  T

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Target: chr3 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 20331787 - 20331695
Alignment:
Q  206 gtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggt 298  Q
    |||||||||||||||||| |||||| || || ||| ||||||| | ||| |||||||| ||| | ||||| |||||||||||||| |||||||    
T  20331787 gtccttataaataggggtcatttgaattctggtccctgaatttaccaatcctttcaaacttgccttgcaattattaatcacttgagttttggt 20331695  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 206 - 298
Target Start/End: Complemental strand, 20309606 - 20309514
Alignment:
Q  206 gtccttataaataggggttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggt 298  Q
    |||| |||||||| |||| |||||| ||||| ||| ||||||| | ||| |||||||| ||| | ||||| |||||||||||||| |||||||    
T  20309606 gtccatataaataagggtcatttgaattttggtccctgaatttaccaatcctttcaaacttgccttgcaattattaatcacttgagttttggt 20309514  T

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Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 242 - 288
Target Start/End: Complemental strand, 26890893 - 26890847
Alignment:
Q  242 tgaatttgctaatgctttcaaatttgtcatgcaaatattaatcactt 288  Q
    ||||||||||||| |||||||||||| ||||||||||| ||||||||    
T  26890893 tgaatttgctaattctttcaaatttgacatgcaaatatgaatcactt 26890847  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 222 - 298
Target Start/End: Original strand, 26888352 - 26888428
Alignment:
Q  222 gttatttgagttttgttccatgaatttgctaatgctttcaaatttgtcatgcaaatattaatcacttgacttttggt 298  Q
    |||| |||||||||| ||| ||||||||| ||| ||||||||| || | | |||||||||||||||||  |||||||    
T  26888352 gttacttgagttttggtccctgaatttgccaatcctttcaaatctgacgtccaaatattaatcacttgtgttttggt 26888428  T

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Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 191 - 288
Target Start/End: Original strand, 20308278 - 20308376
Alignment:
Q  191 ttatttatatgttaagtccttataaataggggttatttgagttttgttccatgaatttgctaatgc-tttcaaatttgtcatgcaaatattaatcactt 288  Q
    |||||| ||| || ||||| ||||||||||||| |||||| ||||| ||| |||||||  |||| | ||| | ||||| | ||||||||||||||||||    
T  20308278 ttatttgtatatttagtccctataaataggggtaatttgaattttggtccctgaatttaataatcctttttatatttgccctgcaaatattaatcactt 20308376  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 191 - 236
Target Start/End: Original strand, 33275269 - 33275314
Alignment:
Q  191 ttatttatatgttaagtccttataaataggggttatttgagttttg 236  Q
    ||||||| ||||| ||||||||||||||| ||| ||||||||||||    
T  33275269 ttatttacatgtttagtccttataaatagaggtcatttgagttttg 33275314  T

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