View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20246_low_1 (Length: 713)
Name: NF20246_low_1
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20246_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 548; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 548; E-Value: 0
Query Start/End: Original strand, 44 - 683
Target Start/End: Complemental strand, 41176726 - 41176086
Alignment:
| Q |
44 |
caaacggggccttaattcgtgtgtagtatatatgttacccttttttacattaaactttgtccggaatacacaaagaatgttagccgtgattaatatgtgg |
143 |
Q |
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| T |
41176726 |
caaacggggccttaattcgtgtgtagtatatatgttacccttttttacattaaactttgtccggaatacacaaagaatgttagccgtgattaatatgtgg |
41176627 |
T |
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| Q |
144 |
ctgnnnnnnnnnnnagtgtaacaaataactatataaaatattacccttttttggaagtgtgtgttcccttgaagacctttacaacaagcaaacttcatct |
243 |
Q |
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| T |
41176626 |
cagtttttttttttagtgtaacaaataactatataaaatattacccttttttggaagtgtgtgttcc-ttgaagacctttacaacaagcaaacttcatct |
41176528 |
T |
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| Q |
244 |
tcaaatcttcaagtttaagataccaataattaattagataacttgtcaaaaaggataattaattagataaatgtgtcatggcaataaaactattttaatt |
343 |
Q |
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| T |
41176527 |
tcaaatcttcaagtttaagataccaataattaattagataacttgtcaaaaaggataattaattagataaatgtgtcatggcaataaaactattttaatt |
41176428 |
T |
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| Q |
344 |
aagtgtactatatactttgtaccaatccagtgtactagttactttgttccatcaagtgctcaactcnnnnnnn-caatttataattaagcagtgggtatg |
442 |
Q |
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| T |
41176427 |
aagtgtactatatactttgtaccaatccagtgtactagttactttgttccatcaagtgctcaactcaagaaaaacaatttataattaagcagtgggtatg |
41176328 |
T |
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| Q |
443 |
gatacaagaaagaaaataactttaggtaagaaagatgaag-aggatttggaaggaaagaaatgatgaagggaatataggcgtccagcatttcatattagg |
541 |
Q |
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| T |
41176327 |
gatacaagaaagaaaataactttaggtaagaaagatgaaggaggatttggaaggaaagaaatgatgaaaggaatataggcgtccagcatttcatattagg |
41176228 |
T |
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| Q |
542 |
gtttatatttctctacaaaattaaaacgttttcatataaagaaaccaaaaaatatatatgttttagagaaatgtcttgaaggattttattttaacaaatt |
641 |
Q |
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| T |
41176227 |
gtttatatttctctacaaaattaaaacgttttcatatggagaaaccaaaaaatatatatgttttagagaaatgtcttgaaggattttattttaacaaatt |
41176128 |
T |
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| Q |
642 |
tttcaagtccttttaatattgttataacactgtcagagcaat |
683 |
Q |
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| T |
41176127 |
tttcaagtccttttaatattgttataacactgtcagagcaat |
41176086 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 17 - 51
Target Start/End: Complemental strand, 41177359 - 41177325
Alignment:
| Q |
17 |
atataactttttcacacaaaattgtatcaaacggg |
51 |
Q |
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| T |
41177359 |
atataactttttcacacaaaattgtatcaaacggg |
41177325 |
T |
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