View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20246_low_10 (Length: 316)

Name: NF20246_low_10
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20246_low_10
NF20246_low_10
[»] chr3 (3 HSPs)
chr3 (3-300)||(25315084-25315377)
chr3 (30-99)||(13843828-13843897)
chr3 (30-104)||(2706423-2706497)
[»] chr2 (7 HSPs)
chr2 (5-118)||(27187099-27187211)
chr2 (5-118)||(27836641-27836753)
chr2 (5-118)||(27836913-27837025)
chr2 (30-104)||(26533407-26533481)
chr2 (5-118)||(21088896-21089008)
chr2 (5-105)||(27187371-27187471)
chr2 (5-105)||(27837185-27837285)
[»] chr1 (3 HSPs)
chr1 (5-118)||(32025066-32025178)
chr1 (5-118)||(32025362-32025474)
chr1 (138-196)||(38010798-38010857)
[»] chr4 (3 HSPs)
chr4 (30-118)||(19987761-19987848)
chr4 (140-223)||(27065611-27065695)
chr4 (140-223)||(27086714-27086798)
[»] scaffold0007 (1 HSPs)
scaffold0007 (5-104)||(261953-262052)
[»] chr8 (8 HSPs)
chr8 (5-104)||(33446102-33446201)
chr8 (30-104)||(34373811-34373885)
chr8 (30-99)||(22576822-22576890)
chr8 (32-116)||(24196031-24196114)
chr8 (30-77)||(15938023-15938070)
chr8 (176-230)||(14101160-14101214)
chr8 (19-104)||(21403113-21403198)
chr8 (19-104)||(21797606-21797691)
[»] chr6 (4 HSPs)
chr6 (5-104)||(30045279-30045378)
chr6 (138-273)||(6889413-6889545)
chr6 (130-224)||(9664973-9665067)
chr6 (5-77)||(1702069-1702141)
[»] chr5 (2 HSPs)
chr5 (30-100)||(10321786-10321856)
chr5 (138-230)||(3726451-3726540)
[»] chr7 (5 HSPs)
chr7 (30-104)||(25194116-25194190)
chr7 (15-118)||(3958249-3958351)
chr7 (30-104)||(23071883-23071957)
chr7 (176-225)||(24977030-24977079)
chr7 (176-225)||(24977295-24977344)


Alignment Details
Target: chr3 (Bit Score: 194; Significance: 1e-105; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 3 - 300
Target Start/End: Complemental strand, 25315377 - 25315084
Alignment:
Q  3 aacccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatga 102  Q
    |||||||| ||||||||||| ||||  |||||||||||||||  |||||||  |||||||||||||||||||||| ||| |||| |||||||||||||||    
T  25315377 aaccctttcctattttgcggcttcactcacctatcaatattcagtggagcatttcaatccagtctataggtagccctttctgtgatccaactctcaatga 25315278  T
Q  103 aaaacaccaattgttaatgataaaggatgcaatttgactcaaataaataatttagatatttaattagaagtgcaattatattaggttgtctttccattta 202  Q
    ||  |||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  25315277 aag-caccgattgttaatgataaaggatgcaatttgactcaaataaataatttagatatttaattagaagtgcaattatattaggttgtttttccattta 25315179  T
Q  203 gttgtttctagttggaccttttaattagttggatctttagtctctaagtccgctaggtttattatccattatca-ccctatatttagtgtccttgtcac 300  Q
    ||||||| ||||||||||||    ||||||||||||||||||||||||| || |||| |||||||||||||||| ||||||||||||||||||||||||    
T  25315178 gttgtttttagttggacctt----ttagttggatctttagtctctaagttcgttagggttattatccattatcacccctatatttagtgtccttgtcac 25315084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 13843828 - 13843897
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaa 99  Q
    ||||||||| ||||||||||| ||||| |||||||||||||||||||| |||  ||||||||||| ||||    
T  13843828 cacctatcagtattcgatggaacaccttaatccagtctataggtagccctttcggtggtccaactttcaa 13843897  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 2706423 - 2706497
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    ||||||||  |||||| |||| || || ||||||| ||||| |||||  ||| ||||||||||||||||||||||    
T  2706423 cacctatcggtattcggtggaacatcttaatccagcctataagtagctctttttgtggtccaactctcaatgaaa 2706497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 27187099 - 27187211
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||| ||    
T  27187099 ccctttcctttttggcggcttcaatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatg-aa 27187197  T
Q  105 aacaccaattgtta 118  Q
    | ||||||||||||    
T  27187198 agcaccaattgtta 27187211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 27836641 - 27836753
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||| ||    
T  27836641 ccctttcctttttggcggcttcaatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatg-aa 27836739  T
Q  105 aacaccaattgtta 118  Q
    | ||||||||||||    
T  27836740 agcaccaattgtta 27836753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 118
Target Start/End: Original strand, 27836913 - 27837025
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||| ||    
T  27836913 ccctttcctttttggcggcttcaatcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatg-aa 27837011  T
Q  105 aacaccaattgtta 118  Q
    | ||||||||||||    
T  27837012 agcaccaattgtta 27837025  T

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Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 26533481 - 26533407
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||   ||||||||||||||||||||    
T  26533481 cacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccatggtccaactctcaatgaaa 26533407  T

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Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 21089008 - 21088896
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| || | ||||| |||| || |||||||||||| |||  ||| |||||||||||||| ||    
T  21089008 ccctttcctttttggcggcttcactcacctatcagtattcggtgaaacaccttaatctagactataggtagccctttccgtgctccaactctcaatg-aa 21088910  T
Q  105 aacaccaattgtta 118  Q
    ||||| ||||||||    
T  21088909 aacacaaattgtta 21088896  T

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Target: chr2; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 27187371 - 27187471
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||| ||  |||||||||||| |||  || ||||||||||||||||||    
T  27187371 ccctttcctttttggcggcttcaatcacctatcagtattcggtggaacaccttaatacaacctataggtagccctttccgttgtccaactctcaatgaaa 27187470  T
Q  105 a 105  Q
    |    
T  27187471 a 27187471  T

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Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 105
Target Start/End: Original strand, 27837185 - 27837285
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||| ||  |||||||||||| |||  || ||||||||||||||||||    
T  27837185 ccctttcctttttggcggcttcaatcacctatcagtattcggtggaacaccttaatacaacctataggtagccctttccgttgtccaactctcaatgaaa 27837284  T
Q  105 a 105  Q
    |    
T  27837285 a 27837285  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 32025178 - 32025066
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||| ||    
T  32025178 ccctttcctttttggcggcttcactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatg-aa 32025080  T
Q  105 aacaccaattgtta 118  Q
    | ||||||||||||    
T  32025079 agcaccaattgtta 32025066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 5 - 118
Target Start/End: Complemental strand, 32025474 - 32025362
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||| ||    
T  32025474 ccctttcctttttggcggcttcactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatg-aa 32025376  T
Q  105 aacaccaattgtta 118  Q
    | ||||||||||||    
T  32025375 agcaccaattgtta 32025362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 138 - 196
Target Start/End: Complemental strand, 38010857 - 38010798
Alignment:
Q  138 gactcaaataaataatttagatatttaa-ttagaagtgcaattatattaggttgtctttc 196  Q
    |||||||||||||||||||  ||||||| ||||||||  ||||||||||| |||||||||    
T  38010857 gactcaaataaataatttacctatttaatttagaagtataattatattagtttgtctttc 38010798  T

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Target: chr4 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 30 - 118
Target Start/End: Complemental strand, 19987848 - 19987761
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaaaacaccaattgtta 118  Q
    ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||| ||| ||||||||||||    
T  19987848 cacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatg-aaagcaccaattgtta 19987761  T

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Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 27065611 - 27065695
Alignment:
Q  140 ctcaaataaataatttagatatttaa-ttagaagtgcaattatattaggttgtctttccatttagttgtttctagttggaccttt 223  Q
    |||||||||||||||||||||||||| ||| ||||  ||||||||||| || |||||   || ||||||| |||||||| |||||    
T  27065611 ctcaaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgggccttt 27065695  T

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Target: chr4; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 140 - 223
Target Start/End: Original strand, 27086714 - 27086798
Alignment:
Q  140 ctcaaataaataatttagatatttaa-ttagaagtgcaattatattaggttgtctttccatttagttgtttctagttggaccttt 223  Q
    |||||||||||||||||||||||||| ||| ||||  ||||||||||| || |||||   || ||||||| |||||||| |||||    
T  27086714 ctcaaataaataatttagatatttaatttataagtaaaattatattagtttatcttttatttgagttgttgctagttgggccttt 27086798  T

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Target: scaffold0007 (Bit Score: 44; Significance: 5e-16; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 262052 - 261953
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||||||    
T  262052 ccctttcctttttggcggcttcactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaa 261953  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 44; Significance: 5e-16; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 33446201 - 33446102
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    ||||||||| ||| |||| ||||| ||||||||| |||| | | |||||||| ||||||| ||||| |||||| |||| ||||||||||| |||||||||    
T  33446201 cccttttctttttggcggcttcattcacctatcagtatttggttgagcaccttaatccagcctatatgtagccctttacgtggtccaactttcaatgaaa 33446102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 30 - 104
Target Start/End: Original strand, 34373811 - 34373885
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    ||||||||| ||||||||||| ||||| ||||||| ||| |||||||  |||| |||||||||||||||||||||    
T  34373811 cacctatcagtattcgatggaacaccttaatccagcctacaggtagcactttacgtggtccaactctcaatgaaa 34373885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 30 - 99
Target Start/End: Original strand, 22576822 - 22576890
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaa 99  Q
    ||||||||| |||||| |||||| ||| |||||||||||| ||||| |||||  ||||||||||||||||    
T  22576822 cacctatcagtattcggtggagcgccttaatccagtctatgggtag-cattttagtggtccaactctcaa 22576890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 116
Target Start/End: Original strand, 24196031 - 24196114
Alignment:
Q  32 cctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaaaacaccaattgt 116  Q
    ||||||| |||||||| |||||||| ||| ||| |||||||||||| |||  |||| | |||||||||| | |||||||||||||    
T  24196031 cctatcagtattcgatagagcaccttaattcagcctataggtagccctttccgtggcctaactctcaat-ataaacaccaattgt 24196114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 30 - 77
Target Start/End: Original strand, 15938023 - 15938070
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagcc 77  Q
    ||||||||| |||||  |||||||||| ||||||||||||||||||||    
T  15938023 cacctatcagtattcagtggagcaccttaatccagtctataggtagcc 15938070  T

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Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 176 - 230
Target Start/End: Original strand, 14101160 - 14101214
Alignment:
Q  176 aattatattaggttgtctttccatttagttgtttctagttggaccttttaattag 230  Q
    ||||||||||| ||||||||| ||| |||||||| ||||||| ||||| ||||||    
T  14101160 aattatattagtttgtctttcaattgagttgtttttagttgggcctttaaattag 14101214  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 21403198 - 21403113
Alignment:
Q  19 gcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||||| |||| |||| | |||| ||||| ||||||| |||||||||||  |||   ||||||||||||||||||||    
T  21403198 gcggttacacccaccaatcagtatttggtggaacaccttaatccagcctataggtagctctttccatggtccaactctcaatgaaa 21403113  T

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Target: chr8; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 104
Target Start/End: Complemental strand, 21797691 - 21797606
Alignment:
Q  19 gcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||||| |||| |||| | |||| ||||| ||||||| |||||||||||  |||   ||||||||||||||||||||    
T  21797691 gcggttacacccaccaatcagtatttggtggaacaccttaatccagcctataggtagctctttccatggtccaactctcaatgaaa 21797606  T

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Target: chr6 (Bit Score: 44; Significance: 5e-16; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 5 - 104
Target Start/End: Complemental strand, 30045378 - 30045279
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    |||||| || ||| |||| ||||  ||||||||| |||||| |||| ||||| ||||||| |||||||||||| |||  |||||||||||||||||||||    
T  30045378 ccctttcctttttggcggcttcactcacctatcagtattcggtggaacaccttaatccagcctataggtagccctttccgtggtccaactctcaatgaaa 30045279  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 138 - 273
Target Start/End: Original strand, 6889413 - 6889545
Alignment:
Q  138 gactcaaataaataatttagatatttaatt-agaagtgcaattatattaggttgtctttccatttagttgtttctagttggaccttttaattagttggat 236  Q
    |||||||||||||||||||| |||||| || | ||||  |||||| |||| |||||||||| || |||||||  ||||||||||||    | |||||| |    
T  6889413 gactcaaataaataatttagctatttagtttataagtaaaattatgttagtttgtctttcctttgagttgttgttagttggacctt----taagttgggt 6889508  T
Q  237 ctttagtctctaagtccgctaggtttattatccatta 273  Q
    ||||||||| || ||||  |||| ||| |||||||||    
T  6889509 ctttagtctttaggtccattagggttactatccatta 6889545  T

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Target: chr6; HSP #3
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 130 - 224
Target Start/End: Complemental strand, 9665067 - 9664973
Alignment:
Q  130 tgcaatttgactcaaataaataatttagatatttaa-ttagaagtgcaattatattaggttgtctttccatttagttgtttctagttggacctttt 224  Q
    ||||||| || | ||||||||||||||| ||||||| ||||||||  ||||||||||| |||||||| | || | |||||| ||||||||||||||    
T  9665067 tgcaattagattaaaataaataatttagctatttaatttagaagtaaaattatattagtttgtcttt-ctttgatttgtttttagttggacctttt 9664973  T

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Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 5 - 77
Target Start/End: Original strand, 1702069 - 1702141
Alignment:
Q  5 cccttttctattttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagcc 77  Q
    |||||||||||||||||| ||||  ||||||| | |||||| |||| ||||| | ||||||||||||| ||||    
T  1702069 cccttttctattttgcggcttcactcacctattagtattcggtggaacaccttagtccagtctataggcagcc 1702141  T

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Target: chr5 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 30 - 100
Target Start/End: Original strand, 10321786 - 10321856
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaat 100  Q
    ||||||||| || ||| |||||||| | ||||||| ||||| |||||||||| ||||||||||||||||||    
T  10321786 cacctatcagtaatcggtggagcactttaatccagcctatatgtagccatttctgtggtccaactctcaat 10321856  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 138 - 230
Target Start/End: Complemental strand, 3726540 - 3726451
Alignment:
Q  138 gactcaaataaataatttagatatttaatt-agaagtgcaattatattaggttgtctttccatttagttgtttctagttggaccttttaattag 230  Q
    |||||||||||||||||||| |||||| || ||||||  ||||||||||| ||||| |    |||| ||||||||||||||| |||| ||||||    
T  3726540 gactcaaataaataatttagttatttatttgagaagtataattatattagtttgtcat----tttaattgtttctagttggatctttaaattag 3726451  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 25194190 - 25194116
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    ||||||||| |||||| |||||||| | ||||||| |||||| ||||| ||| ||| ||||||||||||| ||||    
T  25194190 cacctatcagtattcggtggagcactttaatccagcctatagttagccctttctgtagtccaactctcaacgaaa 25194116  T

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Target: chr7; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 15 - 118
Target Start/End: Original strand, 3958249 - 3958351
Alignment:
Q  15 ttttgcggtttcatccacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaaaacaccaatt 114  Q
    |||||||| ||||| ||| ||||| |||||| || | ||||| ||||||  ||||| |||||| |||  |||||||||||||||| | ||| ||||||||    
T  3958249 ttttgcggcttcattcacatatcagtattcggtgaaacaccttaatccaacctataagtagccctttccgtggtccaactctcaacg-aaagcaccaatt 3958347  T
Q  115 gtta 118  Q
    ||||    
T  3958348 gtta 3958351  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 30 - 104
Target Start/End: Complemental strand, 23071957 - 23071883
Alignment:
Q  30 cacctatcaatattcgatggagcacctcaatccagtctataggtagccatttatgtggtccaactctcaatgaaa 104  Q
    ||||||||| || ||| |||| ||||| ||||||  |||||||| ||  ||| ||||||||||||||||||||||    
T  23071957 cacctatcagtactcggtggaacaccttaatccaacctataggttgctctttctgtggtccaactctcaatgaaa 23071883  T

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Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Original strand, 24977030 - 24977079
Alignment:
Q  176 aattatattaggttgtctttccatttagttgtttctagttggacctttta 225  Q
    ||||||||||| |||||||||  || |||||||||||||||| |||||||    
T  24977030 aattatattagtttgtctttcttttgagttgtttctagttgggcctttta 24977079  T

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Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 176 - 225
Target Start/End: Complemental strand, 24977344 - 24977295
Alignment:
Q  176 aattatattaggttgtctttccatttagttgtttctagttggacctttta 225  Q
    ||||||||||| |||||||||  || |||||||||||||||| |||||||    
T  24977344 aattatattagtttgtctttcttttgagttgtttctagttgggcctttta 24977295  T

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