View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20246_low_16 (Length: 249)
Name: NF20246_low_16
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20246_low_16 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 12 - 249
Target Start/End: Original strand, 39666107 - 39666344
Alignment:
| Q |
12 |
catcatccaaacggcgtgtaactgaagcatcatgtcagataattgttgtgtatcaacagccatgtaattcacaataggaccaacaccatgatcctgtctt |
111 |
Q |
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| T |
39666107 |
catcatccaaacggcgtgtaactgaagcatcatgtcagataattgttgtgtatcaacagccatgtaattcacaataggaccaacaccatgatcctgtctt |
39666206 |
T |
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| Q |
112 |
gcagaacaagatagcctcaacccctttttatacaaagaagtaatgagagtgcatcttataagcattccaagtttctgagagttgaagttgaagtgatgag |
211 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39666207 |
gcagaacaagatagcctcaacccctttttatacaaagaagtaatgagagtgcatctaataagcattccaagtttctgagagttgaagttgaagtgatgag |
39666306 |
T |
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| Q |
212 |
ttgtcaaaacttcaacaaattttgctgcaacaagaatc |
249 |
Q |
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| T |
39666307 |
ttgtcaaaacttcaacaaattttgctgcaacaagaatc |
39666344 |
T |
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