View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20246_low_2 (Length: 471)
Name: NF20246_low_2
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20246_low_2 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 360; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 360; E-Value: 0
Query Start/End: Original strand, 19 - 460
Target Start/End: Original strand, 3045708 - 3046161
Alignment:
| Q |
19 |
ataccatgtagtagaaggggtagacagaaaagtataaaagaagaaacctgagaatatatttttgaaggtttaattccccaaacatgactattttatagtt |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045708 |
ataccatgtagtagaaggggtagacagaaaagtataaaagaagaaacctgagaatatatttttgaaggtttaattccccaaacatgactattttatagtt |
3045807 |
T |
|
| Q |
119 |
gtaatgtt-----------tatattag-taagaaatacaattaattaagaagatccgtatccacttacactcattgagatattatttcatgtgggagtat |
206 |
Q |
| |
|
|||||||| ||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045808 |
gtaatgttcagttaagggatatgttatataagaaatacaattaattaagaagatccgtatccacttacactcattgagatattatttcatgtgggagtat |
3045907 |
T |
|
| Q |
207 |
tgaaattcgtattcgatcgatttattaattgtctgtactaataagtgaaacatcaataatgtaaccactcttgaagaaaatcaatttcatcttctaacgt |
306 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
3045908 |
tgaaattcgtattcgatcgatttattaattgtctgtactaataagtgaaacatcaataatgtaaccactcttgaagaaaatcaatttcatcttctaacgt |
3046007 |
T |
|
| Q |
307 |
ttacttattttaggtcaagtaatcgtgtaatggttaaaaattcatattttaagttggggtgtgcacgatttgaaccctaactcttgtatatatttaactt |
406 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||| |||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
3046008 |
ttacttattttaggtcaagtaattgtgtaatggttagaaattcatattttaaggtggggtgtgcacgattcgaaccctaactcttgtatatatttaactt |
3046107 |
T |
|
| Q |
407 |
cttaattagtgctttagatgcacttattagttaactctattatgtaatgttcat |
460 |
Q |
| |
|
||||| ||||| ||| ||||| ||||||| ||||||||||||||||||||||| |
|
|
| T |
3046108 |
cttaaccagtgccttaaatgcatttattagctaactctattatgtaatgttcat |
3046161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University