View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20246_low_3 (Length: 443)

Name: NF20246_low_3
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20246_low_3
NF20246_low_3
[»] chr1 (15 HSPs)
chr1 (1-442)||(28858072-28858523)
chr1 (2-55)||(33380931-33380984)
chr1 (1-55)||(27761848-27761902)
chr1 (8-55)||(12906186-12906233)
chr1 (397-432)||(28858513-28858548)
chr1 (13-55)||(2493839-2493881)
chr1 (1-46)||(24159808-24159853)
chr1 (86-118)||(23193349-23193381)
chr1 (86-118)||(33381048-33381080)
chr1 (8-51)||(25661839-25661882)
chr1 (8-51)||(32987276-32987319)
chr1 (13-55)||(33301201-33301244)
chr1 (88-118)||(31063893-31063923)
chr1 (86-118)||(2493944-2493976)
chr1 (2-50)||(36724745-36724793)
[»] chr4 (16 HSPs)
chr4 (1-55)||(20513138-20513192)
chr4 (5-48)||(55081716-55081759)
chr4 (88-123)||(15020595-15020630)
chr4 (1-51)||(16595943-16595993)
chr4 (86-118)||(33723045-33723077)
chr4 (86-118)||(55081822-55081854)
chr4 (13-55)||(5271440-5271483)
chr4 (13-51)||(5928240-5928279)
chr4 (13-55)||(13522013-13522056)
chr4 (13-55)||(16421060-16421103)
chr4 (13-55)||(31273552-31273595)
chr4 (13-55)||(31765917-31765960)
chr4 (13-55)||(37259898-37259941)
chr4 (13-55)||(42758776-42758819)
chr4 (1-55)||(33722929-33722983)
chr4 (86-118)||(16596062-16596094)
[»] chr8 (15 HSPs)
chr8 (1-51)||(2470010-2470060)
chr8 (5-55)||(19949850-19949900)
chr8 (3-51)||(19954308-19954356)
chr8 (4-55)||(4544263-4544314)
chr8 (2-55)||(34517273-34517325)
chr8 (86-118)||(34517179-34517211)
chr8 (13-55)||(15875689-15875732)
chr8 (13-55)||(18876388-18876431)
chr8 (13-55)||(31449887-31449930)
chr8 (13-55)||(33416578-33416621)
chr8 (13-55)||(40125906-40125949)
chr8 (13-55)||(44925944-44925987)
chr8 (86-115)||(19954211-19954240)
chr8 (86-118)||(4544378-4544410)
chr8 (58-86)||(19954256-19954284)
[»] chr7 (7 HSPs)
chr7 (8-55)||(29478171-29478218)
chr7 (1-51)||(6898365-6898415)
chr7 (13-55)||(4579539-4579582)
chr7 (13-55)||(9650988-9651031)
chr7 (13-55)||(23246954-23246997)
chr7 (13-55)||(23866099-23866142)
chr7 (13-55)||(26341230-26341273)
[»] scaffold0018 (1 HSPs)
scaffold0018 (5-55)||(171728-171778)
[»] chr3 (17 HSPs)
chr3 (1-55)||(48435837-48435891)
chr3 (1-40)||(4662231-4662270)
chr3 (11-55)||(3657259-3657304)
chr3 (2-51)||(48432444-48432493)
chr3 (86-122)||(4662116-4662152)
chr3 (13-55)||(3419024-3419067)
chr3 (13-55)||(8883199-8883242)
chr3 (13-51)||(20507686-20507725)
chr3 (13-55)||(23666144-23666187)
chr3 (13-55)||(24038392-24038435)
chr3 (13-55)||(32474701-32474744)
chr3 (13-55)||(39775749-39775792)
chr3 (88-118)||(16982930-16982960)
chr3 (13-54)||(23661485-23661527)
chr3 (16-55)||(7571242-7571282)
chr3 (85-117)||(28243633-28243665)
chr3 (86-118)||(48432346-48432378)
[»] chr2 (12 HSPs)
chr2 (2-55)||(14104622-14104675)
chr2 (88-121)||(44957565-44957598)
chr2 (86-118)||(14104528-14104560)
chr2 (13-55)||(1935014-1935057)
chr2 (13-55)||(10160745-10160788)
chr2 (11-54)||(21523983-21524026)
chr2 (13-55)||(29677412-29677455)
chr2 (13-55)||(30650960-30651003)
chr2 (13-55)||(30658294-30658337)
chr2 (13-51)||(44957458-44957496)
chr2 (86-118)||(13060494-13060526)
chr2 (16-55)||(20711476-20711516)
[»] chr6 (11 HSPs)
chr6 (13-55)||(32815084-32815126)
chr6 (13-55)||(35129660-35129702)
chr6 (86-118)||(35129566-35129598)
chr6 (13-55)||(2700127-2700170)
chr6 (1-55)||(33687612-33687667)
chr6 (13-50)||(11614113-11614151)
chr6 (13-55)||(32551540-32551582)
chr6 (89-118)||(29610986-29611015)
chr6 (86-118)||(14775534-14775566)
chr6 (13-41)||(14775630-14775658)
chr6 (13-41)||(29610937-29610965)
[»] scaffold0352 (1 HSPs)
scaffold0352 (13-55)||(7135-7178)
[»] scaffold0182 (1 HSPs)
scaffold0182 (13-55)||(9908-9951)
[»] scaffold0002 (1 HSPs)
scaffold0002 (13-55)||(4105-4148)
[»] chr5 (9 HSPs)
chr5 (13-55)||(3665963-3666006)
chr5 (13-55)||(12103056-12103099)
chr5 (13-55)||(26667303-26667346)
chr5 (13-55)||(26938900-26938943)
chr5 (13-55)||(29167994-29168037)
chr5 (13-55)||(40147926-40147969)
chr5 (2-39)||(18265515-18265552)
chr5 (89-118)||(18265635-18265664)
chr5 (86-118)||(1286390-1286422)
[»] scaffold0097 (1 HSPs)
scaffold0097 (16-55)||(15315-15355)


Alignment Details
Target: chr1 (Bit Score: 361; Significance: 0; HSPs: 15)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 1 - 442
Target Start/End: Original strand, 28858072 - 28858523
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaaaatagtctgcgactcaacctagtaatctcttatttttaactaatt 100  Q
    ||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||||||||||||||||    
T  28858072 ctggggacgtcgtggttgatagtctgcttgcacaattttgagcaatgccacgaaaaatagtttgcgactcaacctagtaatctcttatttttaactaatt 28858171  T
Q  101 ttgactattgttccaacagtttccagttgtcatttttcaaaccgaat----------ctgagcattttgaactttgaacaatgacgacctaaacctgaat 190  Q
    |||||||||||||||||||||||| ||||||||||||||||||||||          ||||||| ||||||||||||||| ||||||||||||||| |||    
T  28858172 ttgactattgttccaacagtttcccgttgtcatttttcaaaccgaattagaagagatctgagcactttgaactttgaacagtgacgacctaaacctaaat 28858271  T
Q  191 gttatgagtgatggagagaaagcagagaagatcgattttgacggagttaatagagattgtgaagagccttcaactaagagggaagcagagaagaaatgag 290  Q
    | ||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  28858272 gctatgagtgatggagagaaagcagagaagatcgattttgacgaagttaatagagattgtgaagagccttcagctaagagggaagcacagaagaaatgag 28858371  T
Q  291 atcgatttgtgggaaagtacatgaggaagagaatagggaagcttatttgagaagatgaacatgagggcattttggttattttacacttgtttgaaagcct 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    
T  28858372 atcgatttgtgggaaagtacatgaggaagagaatagggaagcttatttgagaagatgaacatgagggcattttggttattttgtgcttgtttgaaagcct 28858471  T
Q  391 catgagaattttggttcgttcacataagcttttgatgagtcaattttggttc 442  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  28858472 catgagaattttggttcgttcacataagcttttgatgagtcaattttggttc 28858523  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 2 - 55
Target Start/End: Original strand, 33380931 - 33380984
Alignment:
Q  2 tggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||| ||||||||||||||||||||||||||||||||||| |||||||    
T  33380931 tggggacgtcgtggttgatagtctgcttgcacaattttgagcagtgtcacgaaa 33380984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 27761848 - 27761902
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||| ||||||||||||||||||||||||||||  |||||||||||||    
T  27761848 ctggggacgtcgtggttgatagtctgcttgcacaattttggacagtgccacgaaa 27761902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Complemental strand, 12906233 - 12906186
Alignment:
Q  8 cgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    |||| |||||||||||||||||||||||||||| ||||||||||||||    
T  12906233 cgtcgtggttgatagtctgcttgcacaattttgggcagtgccacgaaa 12906186  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 397 - 432
Target Start/End: Original strand, 28858513 - 28858548
Alignment:
Q  397 aattttggttcgttcacataagcttttgatgagtca 432  Q
    ||||||||||||||||||||||||||||||||||||    
T  28858513 aattttggttcgttcacataagcttttgatgagtca 28858548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 2493839 - 2493881
Alignment:
Q  13 tggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||| |||||||||||||||| ||||||||||||||    
T  2493839 tggttgatagtttgcttgcacaattttgggcagtgccacgaaa 2493881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 1 - 46
Target Start/End: Original strand, 24159808 - 24159853
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagt 46  Q
    ||||||||||| | |||||||||||||||||||||||||| |||||    
T  24159808 ctggggacgtcgtcgttgatagtctgcttgcacaattttgggcagt 24159853  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 23193349 - 23193381
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||||    
T  23193349 tatttttaactaattttgactattgttccaaca 23193381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 33381048 - 33381080
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||||    
T  33381048 tatttttaactaattttgactattgttccaaca 33381080  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Original strand, 25661839 - 25661882
Alignment:
Q  8 cgtcatggttgatagtctgcttgcacaattttgagcagtgccac 51  Q
    |||||||||||||||||| |||||||||||||| | ||||||||    
T  25661839 cgtcatggttgatagtctacttgcacaattttgggtagtgccac 25661882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 8 - 51
Target Start/End: Complemental strand, 32987319 - 32987276
Alignment:
Q  8 cgtcatggttgatagtctgcttgcacaattttgagcagtgccac 51  Q
    ||||||| ||||||||||||||||||||||||  ||||||||||    
T  32987319 cgtcatgattgatagtctgcttgcacaattttaggcagtgccac 32987276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 33301201 - 33301244
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  33301201 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 33301244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 31063923 - 31063893
Alignment:
Q  88 tttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||    
T  31063923 tttttaactaattttgactattgttccaaca 31063893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 2493944 - 2493976
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    ||||||||||||||||||| |||||||||||||    
T  2493944 tatttttaactaattttgattattgttccaaca 2493976  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 2 - 50
Target Start/End: Complemental strand, 36724793 - 36724745
Alignment:
Q  2 tggggacgtcatggttgatagtctgcttgcacaattttgagcagtgcca 50  Q
    ||||| |||| |||||||| ||||||||||||||||||| | |||||||    
T  36724793 tgggggcgtcgtggttgattgtctgcttgcacaattttgggtagtgcca 36724745  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 47; Significance: 1e-17; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 1 - 55
Target Start/End: Complemental strand, 20513192 - 20513138
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||| ||||| |||||||||||||||||||||||||||||||||||||||||||    
T  20513192 ctgggaacgtcgtggttgatagtctgcttgcacaattttgagcagtgccacgaaa 20513138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 5 - 48
Target Start/End: Original strand, 55081716 - 55081759
Alignment:
Q  5 ggacgtcatggttgatagtctgcttgcacaattttgagcagtgc 48  Q
    |||||||||||||||||||||||||| |||||||||||||||||    
T  55081716 ggacgtcatggttgatagtctgcttgtacaattttgagcagtgc 55081759  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 88 - 123
Target Start/End: Original strand, 15020595 - 15020630
Alignment:
Q  88 tttttaactaattttgactattgttccaacagtttc 123  Q
    ||||||||||||||||||||||||||||||||||||    
T  15020595 tttttaactaattttgactattgttccaacagtttc 15020630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 16595943 - 16595993
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccac 51  Q
    ||||||||||| ||||||| ||||||||||||||||||||  |||||||||    
T  16595943 ctggggacgtcgtggttgacagtctgcttgcacaattttggacagtgccac 16595993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 33723045 - 33723077
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||||    
T  33723045 tatttttaactaattttgactattgttccaaca 33723077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 55081822 - 55081854
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||||    
T  55081822 tatttttaactaattttgactattgttccaaca 55081854  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 5271440 - 5271483
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  5271440 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 5271483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 5928240 - 5928279
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccac 51  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  5928240 tggttgatagtctgccttgcacaattttgagcagtgccac 5928279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 13522013 - 13522056
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  13522013 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 13522056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 16421103 - 16421060
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  16421103 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 16421060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 31273595 - 31273552
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  31273595 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 31273552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 31765960 - 31765917
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  31765960 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 31765917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 37259898 - 37259941
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  37259898 tggttgatagtctgccttgcacaattttgagtagtgccacgaaa 37259941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 42758776 - 42758819
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  42758776 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 42758819  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33722929 - 33722983
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||| |||| ||| |||||||||||||||||||  ||||| |||||||    
T  33722929 ctggggacgtcgtggtcgatggtctgcttgcacaattttggacagtgtcacgaaa 33722983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 16596062 - 16596094
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||| ||||||||||||||||||||||    
T  16596062 tatttttaaccaattttgactattgttccaaca 16596094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 15)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 1 - 51
Target Start/End: Complemental strand, 2470060 - 2470010
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccac 51  Q
    ||||||||||| | |||||||||||||||||||||||||||||||||||||    
T  2470060 ctggggacgtcgtagttgatagtctgcttgcacaattttgagcagtgccac 2470010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 5 - 55
Target Start/End: Complemental strand, 19949900 - 19949850
Alignment:
Q  5 ggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||||||||||||||| |||||||| ||||||||||||||    
T  19949900 ggacgtcatggttgatagtctgcttgctcaattttgggcagtgccacgaaa 19949850  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 3 - 51
Target Start/End: Complemental strand, 19954356 - 19954308
Alignment:
Q  3 ggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccac 51  Q
    ||||||||| |||||||||||||||||| ||||||||| ||||||||||    
T  19954356 ggggacgtcgtggttgatagtctgcttgtacaattttgggcagtgccac 19954308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 4 - 55
Target Start/End: Original strand, 4544263 - 4544314
Alignment:
Q  4 gggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||  ||||||||||||| |||||||||||||||||||||||| ||||    
T  4544263 gggacgtagtggttgatagtctacttgcacaattttgagcagtgccatgaaa 4544314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 34517325 - 34517273
Alignment:
Q  2 tggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||| |||| ||||||||||||| ||||||||||||||| |||||||||||||    
T  34517325 tgggggcgtcgtggttgatagtctccttgcacaattttga-cagtgccacgaaa 34517273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 34517211 - 34517179
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||||    
T  34517211 tatttttaactaattttgactattgttccaaca 34517179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 15875689 - 15875732
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  15875689 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 15875732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 18876388 - 18876431
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  18876388 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 18876431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 31449887 - 31449930
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  31449887 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 31449930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 33416621 - 33416578
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  33416621 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 33416578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 40125906 - 40125949
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  40125906 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 40125949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 44925944 - 44925987
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  44925944 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 44925987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 86 - 115
Target Start/End: Complemental strand, 19954240 - 19954211
Alignment:
Q  86 tatttttaactaattttgactattgttcca 115  Q
    ||||||||||||||||||||||||||||||    
T  19954240 tatttttaactaattttgactattgttcca 19954211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 4544378 - 4544410
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||| ||||    
T  4544378 tatttttaactaattttgactattgttctaaca 4544410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 19954284 - 19954256
Alignment:
Q  58 tagtctgcgactcaacctagtaatctctt 86  Q
    |||||||||||||||||||||||||||||    
T  19954284 tagtctgcgactcaacctagtaatctctt 19954256  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 7)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 8 - 55
Target Start/End: Original strand, 29478171 - 29478218
Alignment:
Q  8 cgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||||||| ||||||||||||| ||||||||||||||    
T  29478171 cgtcatggttgatagtctgtttgcacaattttgggcagtgccacgaaa 29478218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 1 - 51
Target Start/End: Original strand, 6898365 - 6898415
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccac 51  Q
    ||||||||||  ||||||||||||||||||||||||||||  |||||||||    
T  6898365 ctggggacgttgtggttgatagtctgcttgcacaattttggacagtgccac 6898415  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 4579582 - 4579539
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  4579582 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 4579539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 9650988 - 9651031
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  9650988 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 9651031  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 23246954 - 23246997
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  23246954 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 23246997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 23866142 - 23866099
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  23866142 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 23866099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 26341273 - 26341230
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  26341273 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 26341230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0018 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 1)
Name: scaffold0018
Description:

Target: scaffold0018; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 5 - 55
Target Start/End: Original strand, 171728 - 171778
Alignment:
Q  5 ggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||| |||||||||||||||||||||||||||  ||||||||||||||    
T  171728 ggacgtcgtggttgatagtctgcttgcacaattttaggcagtgccacgaaa 171778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 17)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 48435837 - 48435891
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||| ||||||||||||||||||||| ||||||| ||||| |||||||    
T  48435837 ctggggacgtcgtggttgatagtctgcttgcactattttgaacagtgtcacgaaa 48435891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 4662270 - 4662231
Alignment:
Q  1 ctggggacgtcatggttgatagtctgcttgcacaattttg 40  Q
    |||||||||||||||||||||||||||||||| |||||||    
T  4662270 ctggggacgtcatggttgatagtctgcttgcataattttg 4662231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 11 - 55
Target Start/End: Original strand, 3657259 - 3657304
Alignment:
Q  11 catggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||||| ||||||||||||||| |||||||||||||    
T  3657259 catggttgatagtctgtcttgcacaattttgaacagtgccacgaaa 3657304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 2 - 51
Target Start/End: Complemental strand, 48432493 - 48432444
Alignment:
Q  2 tggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccac 51  Q
    |||||||||| |||||||||||||| || |||||||||| ||||||||||    
T  48432493 tggggacgtcgtggttgatagtctgttttcacaattttgggcagtgccac 48432444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 122
Target Start/End: Complemental strand, 4662152 - 4662116
Alignment:
Q  86 tatttttaactaattttgactattgttccaacagttt 122  Q
    |||||||||||||||||||||||| ||||||||||||    
T  4662152 tatttttaactaattttgactattattccaacagttt 4662116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 3419067 - 3419024
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  3419067 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 3419024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 8883242 - 8883199
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  8883242 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 8883199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 51
Target Start/End: Complemental strand, 20507725 - 20507686
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccac 51  Q
    ||||||||||||||| ||||||||||||||||||||||||    
T  20507725 tggttgatagtctgccttgcacaattttgagcagtgccac 20507686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 23666144 - 23666187
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  23666144 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 23666187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 24038392 - 24038435
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  24038392 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 24038435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 32474701 - 32474744
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  32474701 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 32474744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 39775749 - 39775792
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  39775749 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 39775792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 88 - 118
Target Start/End: Complemental strand, 16982960 - 16982930
Alignment:
Q  88 tttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||    
T  16982960 tttttaactaattttgactattgttccaaca 16982930  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 54
Target Start/End: Original strand, 23661485 - 23661527
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaa 54  Q
    ||||||||||||||| ||||||||||||| |||||||||||||    
T  23661485 tggttgatagtctgccttgcacaattttgggcagtgccacgaa 23661527  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Original strand, 7571242 - 7571282
Alignment:
Q  16 ttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||| |||||||||||||| ||||||||||||||    
T  7571242 ttgatagtctgtcttgcacaattttgggcagtgccacgaaa 7571282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 85 - 117
Target Start/End: Original strand, 28243633 - 28243665
Alignment:
Q  85 ttatttttaactaattttgactattgttccaac 117  Q
    |||||||||||||||||||||| ||||||||||    
T  28243633 ttatttttaactaattttgacttttgttccaac 28243665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 48432378 - 48432346
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    ||||||||||||||||||||||||||| |||||    
T  48432378 tatttttaactaattttgactattgttgcaaca 48432346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 12)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 2 - 55
Target Start/End: Complemental strand, 14104675 - 14104622
Alignment:
Q  2 tggggacgtcatggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||| ||||||||||| || |||||||||||||||||||| |||||||    
T  14104675 tggggacgtcgtggttgatagtttgtttgcacaattttgagcagtgacacgaaa 14104622  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 88 - 121
Target Start/End: Original strand, 44957565 - 44957598
Alignment:
Q  88 tttttaactaattttgactattgttccaacagtt 121  Q
    ||||||||||||||||||||||||||||||||||    
T  44957565 tttttaactaattttgactattgttccaacagtt 44957598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 14104560 - 14104528
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||||    
T  14104560 tatttttaactaattttgactattgttccaaca 14104528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 1935014 - 1935057
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  1935014 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 1935057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 10160745 - 10160788
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  10160745 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 10160788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 11 - 54
Target Start/End: Original strand, 21523983 - 21524026
Alignment:
Q  11 catggttgatagtctgcttgcacaattttgagcagtgccacgaa 54  Q
    |||||||| |||||||||||||||| |||| |||||||||||||    
T  21523983 catggttgttagtctgcttgcacaaatttgggcagtgccacgaa 21524026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 29677455 - 29677412
Alignment:
Q  13 tggttgatagtctgctt-gcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||||| ||||||||||| ||||||||||||||    
T  29677455 tggttgatagtctgctttgcacaattttgggcagtgccacgaaa 29677412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 30651003 - 30650960
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  30651003 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 30650960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 30658337 - 30658294
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||||| ||||||||||||    
T  30658337 tggttgatagtctgccttgcacaattttgagtagtgccacgaaa 30658294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 51
Target Start/End: Original strand, 44957458 - 44957496
Alignment:
Q  13 tggttgatagtctgcttgcacaattttgagcagtgccac 51  Q
    |||||||||||||||||||||||||||  ||||||||||    
T  44957458 tggttgatagtctgcttgcacaattttttgcagtgccac 44957496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 13060494 - 13060526
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    ||||||||||||||||||||||||||| |||||    
T  13060494 tatttttaactaattttgactattgtttcaaca 13060526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 20711516 - 20711476
Alignment:
Q  16 ttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  20711516 ttgatagtctgtcttgcacaattttgagcagtgctacgaaa 20711476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 32815084 - 32815126
Alignment:
Q  13 tggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||||||||||||||||| |||||||| |||||    
T  32815084 tggttgatagtctgcttgcacaattttgggcagtgccgcgaaa 32815126  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 35129702 - 35129660
Alignment:
Q  13 tggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  35129702 tggttgatagtctgcttgcacaattttgggcagtgccatgaaa 35129660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 35129598 - 35129566
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||||||||||||    
T  35129598 tatttttaactaattttgactattgttccaaca 35129566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 2700127 - 2700170
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| ||||||||||||||| |||||||||||||    
T  2700127 tggttgatagtctgtcttgcacaattttgaacagtgccacgaaa 2700170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 1 - 55
Target Start/End: Original strand, 33687612 - 33687667
Alignment:
Q  1 ctggggacgtcatggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||| |||| |||||||||||||||| ||||||||||||||  |||||||||||||    
T  33687612 ctggagacggcatggttgatagtctgtcttgcacaattttggccagtgccacgaaa 33687667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 50
Target Start/End: Original strand, 11614113 - 11614151
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgcca 50  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  11614113 tggttgatagtctgccttgcacaattttgagcagtgcca 11614151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 32551540 - 32551582
Alignment:
Q  13 tggttgatagtctgcttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||||||||||||||||| ||||  |||||||    
T  32551540 tggttgatagtctgcttgcacaattttgaacagtttcacgaaa 32551582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 29610986 - 29611015
Alignment:
Q  89 ttttaactaattttgactattgttccaaca 118  Q
    ||||||||||||||||||||||||||||||    
T  29610986 ttttaactaattttgactattgttccaaca 29611015  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Complemental strand, 14775566 - 14775534
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||||||| ||||||||    
T  14775566 tatttttaactaattttgactattattccaaca 14775534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 41
Target Start/End: Complemental strand, 14775658 - 14775630
Alignment:
Q  13 tggttgatagtctgcttgcacaattttga 41  Q
    |||||||||||||||||||||||||||||    
T  14775658 tggttgatagtctgcttgcacaattttga 14775630  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 13 - 41
Target Start/End: Original strand, 29610937 - 29610965
Alignment:
Q  13 tggttgatagtctgcttgcacaattttga 41  Q
    |||||||||||||||||||||||||||||    
T  29610937 tggttgatagtctgcttgcacaattttga 29610965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0352 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0352
Description:

Target: scaffold0352; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 7178 - 7135
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  7178 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 7135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0182 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0182
Description:

Target: scaffold0182; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 9908 - 9951
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  9908 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 9951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0002 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: scaffold0002
Description:

Target: scaffold0002; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 4148 - 4105
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  4148 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 4105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 32; Significance: 0.00000001; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 3666006 - 3665963
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  3666006 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 3665963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 12103099 - 12103056
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  12103099 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 12103056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 26667346 - 26667303
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  26667346 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 26667303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 26938943 - 26938900
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  26938943 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 26938900  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Original strand, 29167994 - 29168037
Alignment:
Q  13 tggttgatagtctgc-ttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||||||| ||||||||||||| ||||||||||||||    
T  29167994 tggttgatagtctgccttgcacaattttgggcagtgccacgaaa 29168037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 13 - 55
Target Start/End: Complemental strand, 40147969 - 40147926
Alignment:
Q  13 tggttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    |||||||||||||| |||||||||||||| ||||||||||||||    
T  40147969 tggttgatagtctgtcttgcacaattttgggcagtgccacgaaa 40147926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 2 - 39
Target Start/End: Original strand, 18265515 - 18265552
Alignment:
Q  2 tggggacgtcatggttgatagtctgcttgcacaatttt 39  Q
    |||||||||| |||||||||||||| ||||||||||||    
T  18265515 tggggacgtcgtggttgatagtctgattgcacaatttt 18265552  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 89 - 118
Target Start/End: Original strand, 18265635 - 18265664
Alignment:
Q  89 ttttaactaattttgactattgttccaaca 118  Q
    ||||||||||||||||||||||||||||||    
T  18265635 ttttaactaattttgactattgttccaaca 18265664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 86 - 118
Target Start/End: Original strand, 1286390 - 1286422
Alignment:
Q  86 tatttttaactaattttgactattgttccaaca 118  Q
    |||||||||||||||||||| ||||||||||||    
T  1286390 tatttttaactaattttgacaattgttccaaca 1286422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0097 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold0097
Description:

Target: scaffold0097; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 16 - 55
Target Start/End: Complemental strand, 15355 - 15315
Alignment:
Q  16 ttgatagtctg-cttgcacaattttgagcagtgccacgaaa 55  Q
    ||||||||||| |||||||||||||||||||||| ||||||    
T  15355 ttgatagtctgtcttgcacaattttgagcagtgctacgaaa 15315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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