View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20246_low_4 (Length: 443)
Name: NF20246_low_4
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20246_low_4 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 352; Significance: 0; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 352; E-Value: 0
Query Start/End: Original strand, 11 - 424
Target Start/End: Original strand, 30708499 - 30708916
Alignment:
| Q |
11 |
tagataatacttcctttacagactctaagttagaaatcaaccgtaatcggaagataaactctactggtgatcgcactgacattacagtaacagatatgtt |
110 |
Q |
| |
|
||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30708499 |
tagataatacttcatttacagactctaagttagcaatcaaccgtaatcggaagataaactctacaggtgatcacactgacattacagtaacagatatgtt |
30708598 |
T |
|
| Q |
111 |
tttgatt---catcagcggttaaagagtcagcccgtgttagcaggaaaacctccataccatacacagaca----cacctaccatctacacaaacacagca |
203 |
Q |
| |
|
||||||| |||||| |||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
30708599 |
tttgattattcatcagtggttaaagagtcagcctgtgttagcaggaaaacctccataccatacacagacagacacacctaccatctacacaaacacagca |
30708698 |
T |
|
| Q |
204 |
ggccaaagaaaacatcgtcgtgaatcactttagtaaactcctttaaaaaatatcatgtttgaacaaatgaagacataaatgatacattcaagtttacgtt |
303 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
30708699 |
ggccaaagaaaacatcgtcgtgaatcactttagtaaactcctttaaaaaatatcatgtttgaacaaatga---cataaatgatacattcaagtttacgtt |
30708795 |
T |
|
| Q |
304 |
tgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagagg |
403 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30708796 |
tgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagagg |
30708895 |
T |
|
| Q |
404 |
atatgtcagttggcatagatg |
424 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
30708896 |
atatgtcagttggcatagatg |
30708916 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 255 - 424
Target Start/End: Original strand, 30699278 - 30699441
Alignment:
| Q |
255 |
atcatgtttgaacaaatgaagacataaatgatacattcaagtttacgtttgcacgcagcatatatggttccagaacctatgcttgttagagatgcaacgg |
354 |
Q |
| |
|
||||||||| | ||||||||||||||| |||||||| | |||| ||| || || || ||||| ||||||||||||| | ||| ||||||||||| | |
|
|
| T |
30699278 |
atcatgtttaagcaaatgaagacataa-tgatacatatag--ttacctttacatgctgcgtatatcgttccagaacctacgtgtgtcagagatgcaacag |
30699374 |
T |
|
| Q |
355 |
aggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtcagttggcatagatg |
424 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30699375 |
aggaattgaatacaatgcttc---catttccagattctttaagaagaggatatgtcagttggcatagatg |
30699441 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 312 - 424
Target Start/End: Original strand, 30719150 - 30719259
Alignment:
| Q |
312 |
gcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtca |
411 |
Q |
| |
|
||||| ||| |||||| ||||| |||||| ||||| |||| |||||| |||| |||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
30719150 |
gcatagatgcttccagtacctacgcttgtcagagacccaacagaggaaatgaaaacaatgcttc---catttccagattctttaagaagaggatatgtca |
30719246 |
T |
|
| Q |
412 |
gttggcatagatg |
424 |
Q |
| |
|
||||||||||||| |
|
|
| T |
30719247 |
gttggcatagatg |
30719259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 312 - 424
Target Start/End: Original strand, 30706167 - 30706276
Alignment:
| Q |
312 |
gcatatatggttccagaacctatgcttgttagagatgcaacggaggaattgaatacaatgcttcttgcatttccagattctttaagaagaggatatgtca |
411 |
Q |
| |
|
||||| ||| |||||| ||||| ||| ||||||||||||| |||||| |||| |||||||||| |||||||||||||||||||||||||||||| | |
|
|
| T |
30706167 |
gcatagatgcttccagtacctacacttattagagatgcaacagaggaaatgaacacaatgcttc---catttccagattctttaagaagaggatatgcta |
30706263 |
T |
|
| Q |
412 |
gttggcatagatg |
424 |
Q |
| |
|
|||| |||||||| |
|
|
| T |
30706264 |
gttgacatagatg |
30706276 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 78 - 122
Target Start/End: Original strand, 30705395 - 30705439
Alignment:
| Q |
78 |
tgatcgcactgacattacagtaacagatatgtttttgattcatca |
122 |
Q |
| |
|
||||| || ||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
30705395 |
tgatcacagtgacagtacagttacagatatgtttttgattcatca |
30705439 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University