View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20246_low_6 (Length: 423)
Name: NF20246_low_6
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20246_low_6 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 398; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 398; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Complemental strand, 39666738 - 39666333
Alignment:
| Q |
18 |
atgatgatcatggtttgaataaaccaaatgctactactggttttgcttcagcttctcagttttctaagaccttttggatttggttaaaccctttgttgag |
117 |
Q |
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| T |
39666738 |
atgatgatcatggtttgaataaaccaaatgctactactggttttgcttcagcttctcagttttctaagaccttttggatttggttaaaccctttgttgag |
39666639 |
T |
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| Q |
118 |
taaagggtacaagtcaccgcttaatatcgatgacgttccatccctttctccacagcatagagctgagagaatgtctgttatctttgaatcaaaatggcct |
217 |
Q |
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| T |
39666638 |
taaagggtacaagtcaccgcttaatatcgatgacgttccatccctttctccacagcatagagctgagagaatgtctgttatctttgaatcaaaatggcct |
39666539 |
T |
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| Q |
218 |
aaatcggatgagaggtcgaagaatccagtaagagtcacgttgcttcggtgtttctggaaggatataatattcactgcttttcttgctgtcattaggctgt |
317 |
Q |
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| T |
39666538 |
aaatcggatgagaggtcgaagaatccagtaagagtcacgttgcttcggtgtttctggaaggatataatgttcactgcttttcttgctgtcattaggctgt |
39666439 |
T |
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| Q |
318 |
ctgttatgtttgttggacccgttttaattcaaaattttgttgatttcacttccggaaaaggtagttctgtgtatgaaggatactatctagtgctgattct |
417 |
Q |
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| T |
39666438 |
ctgttatgtttgttggacccgttttaattcaaaattttgttgatttcacttctggaaaaggtagttctgtgtatgaaggatactatctagtgctgattct |
39666339 |
T |
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| Q |
418 |
tgttgc |
423 |
Q |
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| T |
39666338 |
tgttgc |
39666333 |
T |
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Target: chr2 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 300 - 366
Target Start/End: Complemental strand, 14321010 - 14320944
Alignment:
| Q |
300 |
ttgctgtcattaggctgtctgttatgtttgttggacccgttttaattcaaaattttgttgatttcac |
366 |
Q |
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| T |
14321010 |
ttgcagtcattaggctttgtgttatgtatgttggtcccttgttgattcaaagttttgttgatttcac |
14320944 |
T |
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