View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20246_low_9 (Length: 326)
Name: NF20246_low_9
Description: NF20246
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20246_low_9 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 3e-79; HSPs: 10)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 3e-79
Query Start/End: Original strand, 7 - 182
Target Start/End: Original strand, 24004233 - 24004401
Alignment:
| Q |
7 |
ctcacttctagtctctaatggttgttttttgtatattagatttgcgaccccaactccaagcacaatggaagttttgtgggaaggtcttgggagaaatgaa |
106 |
Q |
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| T |
24004233 |
ctcacttctagtctctaatggttgttttttgtatattagatttgcgaccccaactccaagcacaatggaagttttgtgggaaggtcttgggagaaatgaa |
24004332 |
T |
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| Q |
107 |
ggggaaaagcatttgatatcacaggaagtttggttagggcctaggggttgatggatgagacaatcagttaatttac |
182 |
Q |
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| T |
24004333 |
ggggaaaagcatttgatatcacaggaagtttggttagggc-------ttgatggatgagacaatcagttaatttac |
24004401 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 270 - 324
Target Start/End: Original strand, 24013041 - 24013096
Alignment:
| Q |
270 |
ataatttatttgtttcttggatgcatgttatgttttggacat-gcttttggagcac |
324 |
Q |
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| T |
24013041 |
ataatttatttgtttcttggatgcatgttatgttttggacatggcttttggagcac |
24013096 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 23997483 - 23997540
Alignment:
| Q |
72 |
tggaagttttgtgggaaggtcttgggagaaatgaaggggaaaagcatttgatatcaca |
129 |
Q |
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| T |
23997483 |
tggaagttttgtgggaaagtcttgggagaaatgaagaggaaaaacatttgatatcaca |
23997540 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 7 - 70
Target Start/End: Original strand, 24012588 - 24012651
Alignment:
| Q |
7 |
ctcacttctagtctctaatggttgttttttgtatattagatttgcgaccccaactccaagcaca |
70 |
Q |
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| T |
24012588 |
ctcacttctagtctctaatgtgtgtttattgaatattagatctgcgaccccaaatccaagcaca |
24012651 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 268 - 313
Target Start/End: Original strand, 24004554 - 24004599
Alignment:
| Q |
268 |
agataatttatttgtttcttggatgcatgttatgttttggacatgc |
313 |
Q |
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| T |
24004554 |
agataatttagttgtttcttgaatgcatgttatgttttggacatgc |
24004599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 148 - 215
Target Start/End: Original strand, 24012774 - 24012841
Alignment:
| Q |
148 |
taggggttgatgg-atgagacaatcagttaatttactttctagcagttaatttaccttttgccattttc |
215 |
Q |
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| T |
24012774 |
taggggttgatgggatgagacaatcagt-aatttactttctgggagttaatttatattttgccattttc |
24012841 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 71 - 127
Target Start/End: Original strand, 24036318 - 24036374
Alignment:
| Q |
71 |
atggaagttttgtgggaaggtcttgggagaaatgaaggggaaaagcatttgatatca |
127 |
Q |
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| T |
24036318 |
atggaagtttggtgggaaaatcttggaagaaaggaagaggaaaagcatttgatatca |
24036374 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 268 - 306
Target Start/End: Original strand, 23997650 - 23997688
Alignment:
| Q |
268 |
agataatttatttgtttcttggatgcatgttatgttttg |
306 |
Q |
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| T |
23997650 |
agataatttatttgttttttggatgcatgttttgttttg |
23997688 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 72 - 134
Target Start/End: Original strand, 24012673 - 24012735
Alignment:
| Q |
72 |
tggaagttttgtgggaaggtcttgggagaaatgaaggggaaaagcatttgatatcacaggaag |
134 |
Q |
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| T |
24012673 |
tggaagttatgtgggaaaagctagggagaaatgaagaggaaaagaatttgaaatcacaggaag |
24012735 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 72 - 129
Target Start/End: Original strand, 23994480 - 23994537
Alignment:
| Q |
72 |
tggaagttttgtgggaaggtcttgggagaaatgaaggggaaaagcatttgatatcaca |
129 |
Q |
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||||||||| |||| || |||||||||||| |||| |||||||||||||||| |||| |
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| T |
23994480 |
tggaagtttggtggaaaaatcttgggagaaaggaagaggaaaagcatttgataacaca |
23994537 |
T |
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