View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20247_high_6 (Length: 314)
Name: NF20247_high_6
Description: NF20247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20247_high_6 |
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Alignment Details
Target: chr2 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 299
Target Start/End: Complemental strand, 41080179 - 41079878
Alignment:
| Q |
1 |
aattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080179 |
aattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtg |
41080080 |
T |
|
| Q |
101 |
ttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaag |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41080079 |
ttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaag |
41079980 |
T |
|
| Q |
201 |
taatgagagatgttgttgttggtgatgataga---aatgtgtgggacgattgcattgattactatccaccacactctttggccaacccattcatggagaa |
297 |
Q |
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| T |
41079979 |
taatgagagatgttgttgttggtgatgatagaaataatgtgtgggacgattgcattgattactatccaccacactctttggccaacccattcatggagaa |
41079880 |
T |
|
| Q |
298 |
gt |
299 |
Q |
| |
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|| |
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| T |
41079879 |
gt |
41079878 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 10 - 215
Target Start/End: Complemental strand, 23077678 - 23077473
Alignment:
| Q |
10 |
gagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtgttggggtat |
109 |
Q |
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| T |
23077678 |
gagtttagatctaagtgaatatgatcttgagcctgcaaggatgacactacatcgttttggtaacacttctgctggtagtttgtggtatgtgttagggtac |
23077579 |
T |
|
| Q |
110 |
atggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaagtaatgagag |
209 |
Q |
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|||||||| || |||||| | ||||||||||| ||||| || |||||||| || |||||||| ||||||||||| ||||| | |||||||| |||| || |
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| T |
23077578 |
atggaagccaaaaagaggctaaaaaaaggtgatagagtttttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaagtgatgaaag |
23077479 |
T |
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| Q |
210 |
atgttg |
215 |
Q |
| |
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|||||| |
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| T |
23077478 |
atgttg |
23077473 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 215
Target Start/End: Complemental strand, 23073082 - 23072868
Alignment:
| Q |
1 |
aattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtg |
100 |
Q |
| |
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|||||| |||||||||||| | | ||| ||||| || || || ||||| ||| || ||||| | || |||||||| || || ||||| |||||||||||| |
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| T |
23073082 |
aattggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatgacactacatcgtttcggtaacacttctgctagtagcttgtggtatgtg |
23072983 |
T |
|
| Q |
101 |
ttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaag |
200 |
Q |
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|| ||||| |||||||| || |||||| | || |||||||| |||||||| |||||||| || |||||||| ||||||||||| ||||| | ||||||| |
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| T |
23072982 |
ttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaag |
23072883 |
T |
|
| Q |
201 |
taatgagagatgttg |
215 |
Q |
| |
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| |||| |||||||| |
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| T |
23072882 |
tgatgaaagatgttg |
23072868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 67; E-Value: 9e-30
Query Start/End: Original strand, 1 - 215
Target Start/End: Original strand, 23111255 - 23111469
Alignment:
| Q |
1 |
aattgggatgagtttagatctgaatgattatgacctagaaccagcaagaatgtcattacatagatttggtaacacatcagcaagtagtttgtggtatgtg |
100 |
Q |
| |
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|||||| |||||||||||| | | ||| ||||| || || || ||||| ||| || ||||| | || |||||||| || || ||||| |||||||||||| |
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| T |
23111255 |
aattggaatgagtttagatttaagtgaatatgatcttgagcctgcaaggatgacactacatcgtttcggtaacacttctgctagtagcttgtggtatgtg |
23111354 |
T |
|
| Q |
101 |
ttggggtatatggaagctaagaagaggttgaaaaaaggtgagagagtattgatgataagtttaggtgctggctttaaatgcaacagttgttattgggaag |
200 |
Q |
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|| ||||| |||||||| || |||||| | || |||||||| |||||||| |||||||| || |||||||| ||||||||||| ||||| | ||||||| |
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| T |
23111355 |
ttagggtacatggaagcaaaaaagaggctcaagaaaggtgatagagtatttatgataagctttggtgctggatttaaatgcaatagttgcttatgggaag |
23111454 |
T |
|
| Q |
201 |
taatgagagatgttg |
215 |
Q |
| |
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| |||| |||||||| |
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| T |
23111455 |
tgatgaaagatgttg |
23111469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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