View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20247_high_7 (Length: 307)
Name: NF20247_high_7
Description: NF20247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20247_high_7 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 253; Significance: 1e-141; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 12 - 294
Target Start/End: Original strand, 20065199 - 20065478
Alignment:
| Q |
12 |
agatgaatttaattaagttgcaggtgagtttgaagattcttctcatatatgtttaacaaatgcttatagcataagataagattttttatattaggtaaga |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
20065199 |
agatgaatttaattaagttgcaggtgagtttgaagattcttctcatatatgtttaacaaatgcttatagcataagataagattttt---attaggtaaga |
20065295 |
T |
|
| Q |
112 |
agaaaacctggatattaaactacaaggtgaaggtatataatatagttatcttattatcacttaaaatagtttagtgtggcctttattaaactgccacgac |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20065296 |
agaaaacctggatattaaactacaaggtgaaggtatataatatagttatcttattatcacttaaaatagtttagtgtggcctttattaaactgccacgac |
20065395 |
T |
|
| Q |
212 |
tcacaagtcttttttaaaaaattattaaaatgtgccagtttatgtaacaaaaaagatacctataataaacaatgttgcttttg |
294 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||| ||| ||||||||||||||||||| |||||||| |
|
|
| T |
20065396 |
tcacaagtcttttttaaaaaattattaaaatgggccagtttatgtaacaacaaaaatacctataataaacaatgctgcttttg |
20065478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University