View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20247_high_8 (Length: 304)
Name: NF20247_high_8
Description: NF20247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20247_high_8 |
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| [»] chr4 (1 HSPs) |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 14 - 192
Target Start/End: Original strand, 34325421 - 34325599
Alignment:
| Q |
14 |
gaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcacca |
113 |
Q |
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|||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
34325421 |
gaggaatggtgatatatttttcgaaaaaaaagatgaaaaaatagtctgctatgatttaagtacacacatggttgaggaactcggtcttgaagaagcacca |
34325520 |
T |
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| Q |
114 |
tcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
192 |
Q |
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| T |
34325521 |
tcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
34325599 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 14 - 192
Target Start/End: Complemental strand, 29352399 - 29352218
Alignment:
| Q |
14 |
gaggaatggtgatatatt-tttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgagga---actcggtcttgaagaagc |
109 |
Q |
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| T |
29352399 |
gaggaatggtgatatattctttcaaaaaa-aagataaaaaaatagtctgctatgatttaagtacacgcatggttgaggaggaacttggtcttgaagaagc |
29352301 |
T |
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| Q |
110 |
accatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
192 |
Q |
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| T |
29352300 |
accatcaaatagaataatttacaagaaagagtggtttgacaaatccaataacagattagttggttttcttgttctaaactaag |
29352218 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 191 - 304
Target Start/End: Original strand, 34326431 - 34326544
Alignment:
| Q |
191 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
290 |
Q |
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| T |
34326431 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgtgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
34326530 |
T |
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| Q |
291 |
cctccctgctgtcc |
304 |
Q |
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| T |
34326531 |
cctcgctgctgtcc |
34326544 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 151; Significance: 6e-80; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 151; E-Value: 6e-80
Query Start/End: Original strand, 6 - 192
Target Start/End: Original strand, 4028006 - 4028192
Alignment:
| Q |
6 |
ggagcagagaggaatggtgatatatttttcaaaaaagaagatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaag |
105 |
Q |
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||||||| |||||||||||||||||| ||||||||| ||| | ||||||||||||||||||||||||| |||| |||||||||||||||||||||||||| |
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| T |
4028006 |
ggagcagggaggaatggtgatatattcttcaaaaaaaaaggtaaaaaaatagtctgctatgatttaagcacacacatggttgaggaactcggtcttgaag |
4028105 |
T |
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| Q |
106 |
aagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
192 |
Q |
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| T |
4028106 |
aagcaccatcaaatagaataatttacaagaaaaagtggtttgtcaattccagtaaatcattagttggttttcttgttctcaactaag |
4028192 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 191 - 304
Target Start/End: Original strand, 4028507 - 4028620
Alignment:
| Q |
191 |
agtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacag |
290 |
Q |
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| T |
4028507 |
agtgtctggtgcggtaatggtggtttttggggtctgttatgcgggtgctgcggctttggtatgctgctgttctgcttttttggctaggagtatatgacgg |
4028606 |
T |
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| Q |
291 |
cctccctgctgtcc |
304 |
Q |
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| T |
4028607 |
cctcactgctgtcc |
4028620 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 80; Significance: 2e-37; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 17 - 192
Target Start/End: Original strand, 30249919 - 30250097
Alignment:
| Q |
17 |
gaatggtgatatatttttc-aaaaaagaa--gatgaaaaaatagtctgctatgatttaagtacacgcatggttgaggaactcggtcttgaagaagcacca |
113 |
Q |
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||||||||||||||| ||| |||||| || |||| |||| |||||||||||||||||||||||| |||| |||||||| || ||||||||||| ||||| |
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| T |
30249919 |
gaatggtgatatattcttcgaaaaaataaacgatggaaaattagtctgctatgatttaagtacacacatgtttgaggaaatcagtcttgaagaaccacca |
30250018 |
T |
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| Q |
114 |
tcaaatagaataatttacaagaaaaagtggtttgtcaaatccagtgaatcattagttggttttcttgttctcaactaag |
192 |
Q |
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||||||||||||| ||||||||||||||||||| || ||| | | |||||||||||||||||||| ||||||||| |
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| T |
30250019 |
tcaaatagaataacttacaagaaaaagtggtttatcgaattggatcacacattagttggttttcttgttttcaactaag |
30250097 |
T |
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Target: chr4 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 304
Target Start/End: Complemental strand, 28111041 - 28110929
Alignment:
| Q |
192 |
gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc |
291 |
Q |
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|||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| |||||||||||||||||||| |
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| T |
28111041 |
gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc |
28110942 |
T |
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| Q |
292 |
ctccctgctgtcc |
304 |
Q |
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||| |||||||| |
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| T |
28110941 |
ctcattgctgtcc |
28110929 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 49; Significance: 5e-19; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 192 - 304
Target Start/End: Original strand, 24837208 - 24837320
Alignment:
| Q |
192 |
gtgtctggtgcggtaatggtggtttttggggtctgttacgcgggtgctgcggctttggtatgctgctgttctgatttttcggctaggagtatatgacagc |
291 |
Q |
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|||| ||||||||||||||||| |||| ||| || ||| | ||| | || |||||||||||||||||| |||| | ||| |||||||||||||||||||| |
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| T |
24837208 |
gtgtttggtgcggtaatggtggatttttgggccttttaggtgggcgttgaggctttggtatgctgctgctctgctgttttggctaggagtatatgacagc |
24837307 |
T |
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| Q |
292 |
ctccctgctgtcc |
304 |
Q |
| |
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||| |||||||| |
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| T |
24837308 |
ctcattgctgtcc |
24837320 |
T |
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