View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20247_high_9 (Length: 282)
Name: NF20247_high_9
Description: NF20247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20247_high_9 |
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Alignment Details
Target: chr7 (Bit Score: 229; Significance: 1e-126; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 269
Target Start/End: Complemental strand, 6646031 - 6645769
Alignment:
| Q |
1 |
aagattctccttgtgaagaggatatgggattgtttgtaagacagtaaaaccgctatattcaaaagaatgataaaaaacatagtaacaaaaatttgatcaa |
100 |
Q |
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| T |
6646031 |
aagattctccttgtgaagaggatatgggattgtttgtaagacagtaaaaccgctatattcaaaagaatgataaaaa-catagtaacaaaaatttgatcaa |
6645933 |
T |
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| Q |
101 |
ctatagaaagacttttatcaaagaggataatttggaaaggagtagaaaattatcaattgttgtggttctggaaaggtcgcccacttaagtaattaatgtc |
200 |
Q |
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| T |
6645932 |
ctatagaaagactttcatcaaagaggataatttggaaaggagtagaaaaatatcaattgttgtggttctggaaaggtcgcccac-----taattaatgtc |
6645838 |
T |
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| Q |
201 |
caaaactagtcaaaggaaaaggcaaatccaacttcaatcgaaaatcgagagggagaagagccaacattg |
269 |
Q |
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| T |
6645837 |
caaaactagtcaaaggaaaaggcaaatccaacttcaatcgaaaatcgagagggagaagagcctacattg |
6645769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 124 - 233
Target Start/End: Original strand, 8837762 - 8837871
Alignment:
| Q |
124 |
aggataatttggaaaggagtagaaaattatcaattgttgtggttctggaaaggtcgcccacttaagtaattaatgtccaaaactagtcaaaggaaaaggc |
223 |
Q |
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| T |
8837762 |
aggataatttgggaaggagaacaaagttttaaattgttgtgattgtggaaaggttggtcacttaaggaattaatgtccggaactagccaaagctaaaggc |
8837861 |
T |
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| Q |
224 |
aaatccaact |
233 |
Q |
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| T |
8837862 |
aagtccaact |
8837871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 9653209 - 9653116
Alignment:
| Q |
1 |
aagattctccttgtgaagaggatatgggattgtttgtaagacagtaaaaccgctatattcaaaagaatgataaaaaacatagtaacaaaaattt |
94 |
Q |
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||||||||||| | || |||| |||||||||||||| ||| || |||| ||||| ||||||||||| | ||| ||||||||||||||||| |
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| T |
9653209 |
aagattctcctagggataaggaaatgggattgtttgtgcgacgatacaacctctatactcaaaagaatggtctaaagcatagtaacaaaaattt |
9653116 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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