View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20247_low_1 (Length: 539)
Name: NF20247_low_1
Description: NF20247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20247_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 476; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 17 - 527
Target Start/End: Original strand, 40221791 - 40222302
Alignment:
| Q |
17 |
tctctagtaacgccttcaagttattattttttagtagctcatgaatttcatcgtaaccagcggcaagtctataattcaaatcccccaaccaaataatgtt |
116 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221791 |
tctctagtaacgccttcaagttattgttttttagtagctcatgaatttcatcgtaaccagcggcaagtctataattcaaatcccccaaccaaataatgtt |
40221890 |
T |
|
| Q |
117 |
actgcacatataccaaattaattaagagtgtgtagatattaaataattagaaatttggaatcattattcataggacttactcatgttctagtataccaag |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221891 |
actgcacatataccaaattaattaagagtgtgtagatattaaataattagaaatttggaatcattattcataggacttactcatgttctagtataccaag |
40221990 |
T |
|
| Q |
217 |
tgagtgagaaaatttagttctcttgatgatttccgcgatgtccaagtttcgacgcaactcgtcaccacatttctctccagaggccaagtgagtgcaaacg |
316 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40221991 |
tgagtgagaaaatttagttctcttgatgatttccgcgatgtccaagtttcgacgcaactcgtcaccacatttctctccagaggccaagtgagtgcaaacg |
40222090 |
T |
|
| Q |
317 |
aagcagaatgtggtatggtacaatctcatgctaatagatatcgaaccctgttagcataaaacacaaatttataaaaatgtaagcaatgaatcataatcat |
416 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||| |
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| T |
40222091 |
aagcagaatgtggtttggtacaatctcatgctaatagatatcgaaccctgttagcataaaccacaaatttacaaaaatgtaagcaatgaatcataatcat |
40222190 |
T |
|
| Q |
417 |
accactgtatccagtacatagtcctacttcatcttgaaatctcacatttccatagcaaaatctgaagcaacagctaattaattagaaccattttatag-c |
515 |
Q |
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||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| | |
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| T |
40222191 |
accactgtagccagtacatagtcctacttcatcttgaaatgtcacatttccatagcaaaatctgaagcaatagctaattaattagaaccattttatagcc |
40222290 |
T |
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| Q |
516 |
cccctcatatat |
527 |
Q |
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|||||||||||| |
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| T |
40222291 |
cccctcatatat |
40222302 |
T |
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