View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20247_low_10 (Length: 274)
Name: NF20247_low_10
Description: NF20247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20247_low_10 |
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Alignment Details
Target: chr6 (Bit Score: 240; Significance: 1e-133; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 240; E-Value: 1e-133
Query Start/End: Original strand, 11 - 258
Target Start/End: Original strand, 7087120 - 7087367
Alignment:
| Q |
11 |
caaaggtacttaggttctatttggataaacaactaattaatcgtgtatatatcattggcgtttaatcgtttatcatatacgtgtttatgtacaacatttt |
110 |
Q |
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| T |
7087120 |
caaaggtacttaggttctatttggataaacaactaattaatcgtgtatatatcattagcgtttaatcgtttatcatatacgtgtttatgtacaacatttt |
7087219 |
T |
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| Q |
111 |
ctataacaaaagaaaaactcgaactatttttgtgtaagttaaaagctgtttcataagctagtctgatgcgcttatggaagtaaatgaaaacagctcataa |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7087220 |
ctataacaaaagaaaaactcgaactgtttttgtgtaagttaaaagctgtttcataagctagtctgatgcgcttatggaagtaaatgaaaacagctcataa |
7087319 |
T |
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| Q |
211 |
acttaggcggcggagtttaaatcccctcgaagaccgttgtaaaatgct |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
7087320 |
acttaggcggcggagtttaaatcccctcgaagaccgttgtaaaatgct |
7087367 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 11 - 258
Target Start/End: Complemental strand, 8805308 - 8805061
Alignment:
| Q |
11 |
caaaggtacttaggttctatttggataaacaactaattaatcgtgtatatatcattggcgtttaatcgtttatcatatacgtgtttatgtacaacatttt |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8805308 |
caaaggtacttaggttctatttggataaacaactaattaatcgtgtatatatcattagcgtttaatcgtttatcatatacgtgtttatgtacaacatttt |
8805209 |
T |
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| Q |
111 |
ctataacaaaagaaaaactcgaactatttttgtgtaagttaaaagctgtttcataagctagtctgatgcgcttatggaagtaaatgaaaacagctcataa |
210 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
8805208 |
ctataacaaaagaaaaactcgaactgtttttgtgtaagttaaaagctgtttcataagctagtctgatgagcttatggaagtaaatgaaaacagctcataa |
8805109 |
T |
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| Q |
211 |
acttaggcggcggagtttaaatcccctcgaagaccgttgtaaaatgct |
258 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8805108 |
acttaggcggcggagtttaaatcccctcgaagaccgttgtaaaatgct |
8805061 |
T |
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