View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20247_low_11 (Length: 252)
Name: NF20247_low_11
Description: NF20247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20247_low_11 |
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| [»] scaffold0280 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 222; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 6646011 - 6646248
Alignment:
| Q |
1 |
cctcttcacaaggagaatcttcattagagtcattatcctctggaactgaagaggttgccttggacaaagaggcttttaatgcggtagatttcttcttttt |
100 |
Q |
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| T |
6646011 |
cctcttcacaaggagaatcttcattagagtcattatcctctggaactgaagaggttgccttggacaaagaggcttttaatgcggtagatttcttcttttt |
6646110 |
T |
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| Q |
101 |
ctttttaacactttcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaaatatggcattgatgtctagagtggggagattt |
200 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| |
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| T |
6646111 |
cttcttaacactttcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaattatggcattgatgtctagagtgtggagattt |
6646210 |
T |
|
| Q |
201 |
tgagactccttgatggtcttcacctttggcttcctctc |
238 |
Q |
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| T |
6646211 |
tgagactccttgatggtcgtcacctttggcttcctctc |
6646248 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 58 - 216
Target Start/End: Complemental strand, 4500594 - 4500436
Alignment:
| Q |
58 |
ccttggacaaagaggcttttaatgcggtagatttcttctttttctttttaacactttcctcactagctttcaaccttgtaatttaatgatcatgctcctt |
157 |
Q |
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| T |
4500594 |
ccttggaagaagaggcttttaatgcgatgaacttcttctccttcttcttaacatttttctcactaactttcaaccttgtcatttcatgctcatgttcctt |
4500495 |
T |
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| Q |
158 |
gagctttccaaatatggcattgatgtctagagtggggagattttgagactccttgatgg |
216 |
Q |
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| T |
4500494 |
gagctttccaaataagacggtgatgtctagagtgttgagatttcgagactccttgatgg |
4500436 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 3 - 229
Target Start/End: Complemental strand, 8837656 - 8837431
Alignment:
| Q |
3 |
tcttcacaaggagaatcttcattagagtcattatcctctggaactgaagaggttgccttggacaaagaggcttttaatgcggtagatttcttctttttct |
102 |
Q |
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||||||| ||| |||||||||||||||||| |||||||| |||| ||||||| |||||||| ||| | | ||||| || | || ||||||| |||| |
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| T |
8837656 |
tcttcactaggtgaatcttcattagagtcaatatcctcttgaacccaagaggtcaccttggacgaagtgtcctttaacacgattgacttcttctccttct |
8837557 |
T |
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| Q |
103 |
ttttaacactttcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaaatatggcattgatgtctagagtggggagattttg |
202 |
Q |
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| | ||||||||| || || |||| |||||||| |||| || ||||| |||||||| |||||| ||| || |||| |||||| || |||| |||| |
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| T |
8837556 |
tctaaacactttcttcgcttactttaaaccttgtgattttctgctcatgttccttgagatttccatataaggtggtgatctctagattgttgaga-tttg |
8837458 |
T |
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| Q |
203 |
agactccttgatggtcttcacctttgg |
229 |
Q |
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|||||||||||||| |||||||||| |
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| T |
8837457 |
agactccttgatggcactcacctttgg |
8837431 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.000000000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 87 - 171
Target Start/End: Complemental strand, 13119934 - 13119850
Alignment:
| Q |
87 |
gatttcttctttttctttttaacactttcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaaata |
171 |
Q |
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|||||||||| |||||| |||||| |||||||| ||| |||||| |||| |||| ||| ||||| | ||||||||||||||||| |
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| T |
13119934 |
gatttcttctctttcttattaacattttcctcattagatttcaatattgtgatttcatgctcatgttacttgagctttccaaata |
13119850 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0280 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: scaffold0280
Description:
Target: scaffold0280; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 5 - 171
Target Start/End: Complemental strand, 5845 - 5679
Alignment:
| Q |
5 |
ttcacaaggagaatcttcattagagtcattatcctctggaactgaagaggttgccttggacaaagaggcttttaatgcggtagatttcttctttttcttt |
104 |
Q |
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||||| ||||||||||| |||||||||| |||| ||| |||| |||||||| |||| || ||||||| ||||| ||| | ||||||||||| | || |
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| T |
5845 |
ttcactaggagaatctttattagagtcactatcatcttgaaccaaagaggtttcctttgattaagaggcatttaacgcgatgaatttcttctttgttttc |
5746 |
T |
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| Q |
105 |
ttaacactttcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaaata |
171 |
Q |
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| || | ||| |||| || ||||||| |||| |||| ||| ||| |||||||| ||||||||||| |
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| T |
5745 |
taaatatttttctcattatctttcaaaattgttatttcatgctcacactccttgatctttccaaata |
5679 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 114 - 216
Target Start/End: Original strand, 21845018 - 21845120
Alignment:
| Q |
114 |
tcctcactagctttcaaccttgtaatttaatgatcatgctccttgagctttccaaatatggcattgatgtctagagtggggagattttgagactccttga |
213 |
Q |
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||||||||| |||||||||||| |||| ||| ||||| ||||||||||||||||||| | ||||| ||| |||| |||||||| ||| ||||||| |
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| T |
21845018 |
tcctcactaactttcaaccttgcgatttcatgctcatgttccttgagctttccaaataagatggtgatgcctatagtgttgagattttcagagtccttga |
21845117 |
T |
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| Q |
214 |
tgg |
216 |
Q |
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||| |
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| T |
21845118 |
tgg |
21845120 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 11 - 97
Target Start/End: Original strand, 9653199 - 9653285
Alignment:
| Q |
11 |
aggagaatcttcattagagtcattatcctctggaactgaagaggttgccttggacaaagaggcttttaatgcggtagatttcttctt |
97 |
Q |
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||||||||||||| || | ||| ||||||| |||| ||| ||||||||||||||||| | || ||||||||| | | ||||||||| |
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| T |
9653199 |
aggagaatcttcactaaaatcactatcctcatgaaccgaaaaggttgccttggacaaacatgcctttaatgcgatgggtttcttctt |
9653285 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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