View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20247_low_13 (Length: 249)
Name: NF20247_low_13
Description: NF20247
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20247_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 43024095 - 43023864
Alignment:
| Q |
4 |
gtagattattctccttttcctggtcttttgtctggtgcatagaatgaattacaagtataatcaatagatgtataaagnnnnnnnttcaaattcaaattat |
103 |
Q |
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| T |
43024095 |
gtagattatcctccttttcctggtgttttgtctggtgcatagaatgaattacaagtataatcaatagatgtataaagaaaaaaattcaaattcaaattat |
43023996 |
T |
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| Q |
104 |
tgtcttcttactaaactaatgctatgtgtggatatctaatatgggtgaaatggatgaaatcaaaacgatgggatgggatacaattactataaaatatgct |
203 |
Q |
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| T |
43023995 |
tgtcttcttactaaactaatgctatgtgtggatatctaatatgggtgaaatggatgaaatcaagacgatgggatgggatacaattactataaaatatgct |
43023896 |
T |
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| Q |
204 |
tggatgttttacaatgcaatggagaaaaatat |
235 |
Q |
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| T |
43023895 |
tggatgttttacaatgcaatggagaaaaatat |
43023864 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 160; E-Value: 2e-85
Query Start/End: Original strand, 4 - 228
Target Start/End: Complemental strand, 35062747 - 35062523
Alignment:
| Q |
4 |
gtagattattctccttttcctggtcttttgtctggtgcatagaatgaattacaagtataatcaatagatgtataaagnnnnnnnttcaaattcaaattat |
103 |
Q |
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||||||||| |||||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
35062747 |
gtagattatcctccttttcctggtgttttgtttggtgcatagaatgaattacaagtataatcaatagatgcataaagaaaaagattcaaattcaaattat |
35062648 |
T |
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| Q |
104 |
tgtcttcttactaaactaatgctatgtgtggatatctaatatgggtgaaatggatgaaatcaaaacgatgggatgggatacaattactataaaatatgct |
203 |
Q |
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| T |
35062647 |
tgtcttcttaccaaactaatgctatgtgtggatatctaatatgggtgaaatggatgaaggcaaaacgatgggatgggataaaattactataaaatatgtt |
35062548 |
T |
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| Q |
204 |
tggatgttttacaatgcaatggaga |
228 |
Q |
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| T |
35062547 |
tggatgttttataatgccatggaga |
35062523 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 4 - 235
Target Start/End: Complemental strand, 42813754 - 42813538
Alignment:
| Q |
4 |
gtagattattctccttttcctggtcttttgtctggtgcatagaatgaattacaagtataatcaatagatgtataaagnnnnnnnttcaaattcaaattat |
103 |
Q |
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||||||||| ||||||| |||||| |||||| |||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||| |
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| T |
42813754 |
gtagattatcctcctttacctggtgttttgtttggtgcatagaatgaattacaagtataatcaatagatgcataaagaaaaaaattcaaattcaaattat |
42813655 |
T |
|
| Q |
104 |
tgtcttcttactaaactaatgctatgtgtggatatctaatatgggtgaaatggatgaaatcaaaacgatgggatgggatacaattactataaaatatgct |
203 |
Q |
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||||| ||||||||||||| |||||||||||||||||| |||||| ||||||||||||||||||||| || |||||||||||| | | |
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| T |
42813654 |
tgtct-------------atgctatgtgtgg--atctaatatgggtgaaattgatgaagtcaaaacgatgggatgggataaaactactataaaataagtt |
42813570 |
T |
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| Q |
204 |
tggatgttttacaatgcaatggagaaaaatat |
235 |
Q |
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||| |||| | |||||||||||||||||||| |
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| T |
42813569 |
cggacgtttcataatgcaatggagaaaaatat |
42813538 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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