View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20248_high_1 (Length: 740)
Name: NF20248_high_1
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_high_1 |
 | |
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Alignment Details
Target: chr2 (Bit Score: 638; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 638; E-Value: 0
Query Start/End: Original strand, 11 - 724
Target Start/End: Original strand, 18642276 - 18642987
Alignment:
| Q |
11 |
caaaggctaagattccgtttttagttttcaactaccaaaaagataaaagcgtcactttatcaaaaaagttggttcatagacgaatcctttggctgaaaaa |
110 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18642276 |
caaaggctaagatttcgtttttagttttcaactaccaaaaagataaaagcgtcactttatcaaaaaagttggttcatagacgaatcctttggctgaaaaa |
18642375 |
T |
|
| Q |
111 |
tgtgacaattcctttcatttcaaataacccaaacacaagatagccaaatcaatggaagagaagatgaacattttctagactcacctcctaaactttcgta |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
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| T |
18642376 |
tgtgacaattcctttcatttcaaataacccaaacacaagatagccaaatcaatggaagagaagatcgacattttctagactcacctcctaaactttcgta |
18642475 |
T |
|
| Q |
211 |
ttgagtgaggtgatcagaaagacacattagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaa |
310 |
Q |
| |
|
|||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18642476 |
ttgagtgacgtgatcagaaagacacatcagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaa |
18642575 |
T |
|
| Q |
311 |
aactagtgattgacgctttcctccatctcatagccactcgaagacatattataattaaacggaaaaattccaagccgaagccaattatccttcactggta |
410 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||||| ||||| |
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|
| T |
18642576 |
aactagtgattgacgctttcctccatctcatagccactcgaagac--attataattaaacggaaaaattccaagccgaagccaattttccttcattggta |
18642673 |
T |
|
| Q |
411 |
tgcgattgtgtaataactgtcaaacaaacaaagaaaccttcaaagggatagctttattccagacaatatcttaggtgccataaagaccagcctgctccac |
510 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
18642674 |
tgcgattgtgtaataactgtcaaataaacaaagaaaccttcaaagggatagttttattccagacaatatcttaggtgccataaagaccagcctgctccac |
18642773 |
T |
|
| Q |
511 |
atgagagaccatatgatagatgttgcttattgtgtattctatgcttggatcaagattctaaacccatttgtctttcatatcatcctgcnnnnnnntgtta |
610 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||| ||||| |
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|
| T |
18642774 |
atgagagaccatatgatagatgttgcttattgtgtattctatgcttggatcaagattccaatcccatttgtctttcatatcatcctgcaaaaaaatgtta |
18642873 |
T |
|
| Q |
611 |
tacaacaattaactacactctgctcttcctccaaacctaataacctcctcctcccctttcatccatcttccccaatacctcaccctaaggaacaaacctc |
710 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18642874 |
tacaacaattaactacactctgctcttcctccaaacctaataacctcctcctcccctttcatccatcttccccaatacctcaccctaaggaacaaacctc |
18642973 |
T |
|
| Q |
711 |
aggcacatacacca |
724 |
Q |
| |
|
|||||||||||||| |
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|
| T |
18642974 |
aggcacatacacca |
18642987 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 263 - 479
Target Start/End: Original strand, 39752619 - 39752834
Alignment:
| Q |
263 |
cattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaactagtgattgacgctttcctccatctcatagccactcgaagacatatt-a |
361 |
Q |
| |
|
|||||||||||||||||| || |||||||||||||||||||| |||||| | ||||||| ||||||||| | || | ||||||||| ||||||| | |
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|
| T |
39752619 |
cattgcagaatgagaaaccaaatgttaccataaaaattacaaaaaaaaaaaaaa--attgacgttttcctccaccccacatccactcgaacacatattta |
39752716 |
T |
|
| Q |
362 |
taattaaacggaaaaattccaagccgaagccaattatccttcactggtatgcgattgtgtaataactgtcaaacaaacaaagaaaccttcaaagggatag |
461 |
Q |
| |
|
| ||| || || |||| || | |||| |||| ||||| || |||||||||||| |||||| |||| |||||||||||||||||||| || || |
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|
| T |
39752717 |
gagttagacataagaatttcacacttaagcaaattgtccttagttgttatgcgattgtgcaataaccatcaagcaaacaaagaaaccttcaaaagggcag |
39752816 |
T |
|
| Q |
462 |
ctttattccagacaatat |
479 |
Q |
| |
|
|||||||||||| ||||| |
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|
| T |
39752817 |
ctttattccagataatat |
39752834 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 39; Significance: 0.000000000001; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 337
Target Start/End: Complemental strand, 25952519 - 25952304
Alignment:
| Q |
114 |
gacaattcctttcatttcaaataacccaaacacaagatagccaaatcaatggaagagaagatgaacattttctagactcacctcctaaactttcgtattg |
213 |
Q |
| |
|
||||||| |||| |||||||||||||||||||| ||||| |||||||| ||||||||| | |||||| | |||||||| | ||| |||| |
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|
| T |
25952519 |
gacaattattttcttttcaaataacccaaacacaggatagtcaaatcaaatgaagagaaggtcgacattt--------ctcctcctaagcgttcaaattg |
25952428 |
T |
|
| Q |
214 |
agtgaggtgatcagaaagacacattagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaac |
313 |
Q |
| |
|
||| ||||||| ||||| | |||| ||||||| ||||||| |||||| |||||||||||||| || | |||||| ||||| | |||| ||||| |
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|
| T |
25952427 |
agtaaggtgataagaaataatcattgtacctgcttagtgaatacttaaccaatgcagaatgagaaatcaaacgctaccatcaaaatcaaaacccaaaaat |
25952328 |
T |
|
| Q |
314 |
tagtgattgacgctttcctccatc |
337 |
Q |
| |
|
|||||||||| |||||||||||| |
|
|
| T |
25952327 |
aagtgattgacactttcctccatc |
25952304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 103 - 337
Target Start/End: Complemental strand, 25952017 - 25951782
Alignment:
| Q |
103 |
ctgaaaaatgtgacaattcctttcatttcaaataacccaaacacaagatagccaaatc-aatggaagagaagatgaaca-ttttctagactcacctccta |
200 |
Q |
| |
|
|||||||||| ||||||| | || ||||||||||||||||||||||| | ||||||| ||||||| | ||| | || |||| ||||||| ||||||| |
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|
| T |
25952017 |
ctgaaaaatgcgacaattattgtcttttcaaataacccaaacacaagacaaccaaatcaaatggaa-ataaggtcgccatttttatagactctcctccta |
25951919 |
T |
|
| Q |
201 |
aactttcgtattgagtgaggtgatcagaaagacacattagacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaatt |
300 |
Q |
| |
|
| ||||| ||||||| ||||||| ||||||| | | || |||||| |||||| |||||| || ||| ||||||| || || |||||| ||||| |
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|
| T |
25951918 |
agctttcaaattgagtaaggtgataagaaagaatcgtcaggcctgcttagtgaagaattaaccaatgtagattgagaaatcaaatgctaccatcaaaatc |
25951819 |
T |
|
| Q |
301 |
acaaccaaaaaactagtgattgacgctttcctccatc |
337 |
Q |
| |
|
| |||| ||||| ||||||||| |||||||| |||| |
|
|
| T |
25951818 |
aaaacccaaaaataagtgattgatgctttccttcatc |
25951782 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 140 - 337
Target Start/End: Complemental strand, 25953581 - 25953388
Alignment:
| Q |
140 |
caaacacaagatagccaaatcaatggaagagaagatgaacattttctagactcacctcctaaactttcgtattgagtgaggtgatcagaaagacacatta |
239 |
Q |
| |
|
|||||||||||||| |||||||| ||||||| | | |||||||||||||| |||||||| |||| | ||||| ||||||| | | ||| || | |
|
|
| T |
25953581 |
caaacacaagatagtcaaatcaaatatagagaaggtcagcattttctagactctcctcctaagcttttaaactgagtaaggtgataacatagagtcaat- |
25953483 |
T |
|
| Q |
240 |
gacctgctgagtgaatgtctaaccattgcagaatgagaaacaaattgttaccataaaaattacaaccaaaaaactagtgattgacgctttcctccatc |
337 |
Q |
| |
|
||||| ||||||| |||||| |||||| ||||||| || | |||||| ||||| |||||| |||||| |||||||||| |||||||||||| |
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|
| T |
25953482 |
---ctgcttagtgaatacttaaccaatgcagagtgagaaatcaaacgctaccatcaaaatcacaacccaaaaacaagtgattgacactttcctccatc |
25953388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 119 - 159
Target Start/End: Original strand, 10874914 - 10874954
Alignment:
| Q |
119 |
ttcctttcatttcaaataacccaaacacaagatagccaaat |
159 |
Q |
| |
|
|||||||| |||||||||||||||||| ||||||||||||| |
|
|
| T |
10874914 |
ttcctttcctttcaaataacccaaacagaagatagccaaat |
10874954 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 118 - 162
Target Start/End: Original strand, 10468965 - 10469009
Alignment:
| Q |
118 |
attcctttcatttcaaataacccaaacacaagatagccaaatcaa |
162 |
Q |
| |
|
|||||||||||||||||||||||||| ||| ||||||||||||| |
|
|
| T |
10468965 |
attcctttcatttcaaataacccaaatgcaacatagccaaatcaa |
10469009 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 420 - 453
Target Start/End: Complemental strand, 42759911 - 42759878
Alignment:
| Q |
420 |
gtaataactgtcaaacaaacaaagaaaccttcaa |
453 |
Q |
| |
|
|||| ||||||||||||||||||||||||||||| |
|
|
| T |
42759911 |
gtaacaactgtcaaacaaacaaagaaaccttcaa |
42759878 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 382 - 475
Target Start/End: Complemental strand, 2757539 - 2757447
Alignment:
| Q |
382 |
aagccgaagccaattatccttcactggtatgcgattgtgtaataactgtcaaacaaacaaagaaaccttcaaagggatagctttattccagaca |
475 |
Q |
| |
|
|||||||| | |||||||||||| ||||| |||||| |||| ||| | |||| ||| ||||||||| ||||||||||| |||| ||| ||||| |
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|
| T |
2757539 |
aagccgaatcaaattatccttcattggtaaccgattgcgtaagaaccgccaaataaataaagaaacc-tcaaagggataacttttttcaagaca |
2757447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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