View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20248_high_12 (Length: 298)
Name: NF20248_high_12
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_high_12 |
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Alignment Details
Target: chr5 (Bit Score: 259; Significance: 1e-144; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 20 - 286
Target Start/End: Original strand, 18195119 - 18195385
Alignment:
| Q |
20 |
gactggacatggcttctaggagagtgaagagattcctcagaattaacatgaaaatcaaaatctactcatgatcagggatattaggctcctttggatcctg |
119 |
Q |
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| T |
18195119 |
gactggacatggcttctaggagagtgaagagattcctcagaattaacatgaaaatcaaaatctactcatgatcagggatattaggctcctttggatcctg |
18195218 |
T |
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| Q |
120 |
aatattatttagagtctcagaaacaagatcaacctgagacttatcaccaacaaccagaggcttattgttaaccggttcacaattgtcctttcaaccagaa |
219 |
Q |
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| T |
18195219 |
aatattatttagagtctcagaaacaaaatcaacctgagacttatcaccaacaaccagaggcttattgttaaccggttcacaattgtcccttcaaccagaa |
18195318 |
T |
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| Q |
220 |
ttctattttactgggaagaatcatttactttctcttgctctagtattgcctttctatatcgatcctt |
286 |
Q |
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| T |
18195319 |
ttctattttactgggaagaatcatttactttctcttgctctagtattgcctttctatatcgatcctt |
18195385 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 98 - 271
Target Start/End: Original strand, 18189796 - 18189969
Alignment:
| Q |
98 |
tattaggctcctttggatcctgaatattatttagagtctcagaaacaagatcaacctgagacttatcaccaacaaccagaggcttattgttaaccggttc |
197 |
Q |
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| T |
18189796 |
tattaggctcctctggatcctgaacatcgtttgttgtctcagcaacagagtcaacccgggacttataaccaacaaccagaagtttactgctaaccggttc |
18189895 |
T |
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| Q |
198 |
acaattgtcctttcaaccagaattctattttactgggaagaatcatttactttctcttgctctagtattgcctt |
271 |
Q |
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| T |
18189896 |
acaattgtgcttccaaccagaattctatcttccggagacgaaccatttactttctcttcctctactattgcctt |
18189969 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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