View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20248_high_14 (Length: 253)

Name: NF20248_high_14
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20248_high_14
NF20248_high_14
[»] chr6 (3 HSPs)
chr6 (21-70)||(5400902-5400951)
chr6 (20-69)||(21784337-21784386)
chr6 (20-68)||(15145776-15145824)
[»] chr2 (3 HSPs)
chr2 (18-63)||(3362695-3362740)
chr2 (20-68)||(3106148-3106196)
chr2 (20-68)||(22064705-22064753)
[»] chr1 (2 HSPs)
chr1 (20-81)||(4514200-4514261)
chr1 (20-69)||(13158879-13158928)
[»] chr4 (2 HSPs)
chr4 (21-68)||(44097656-44097703)
chr4 (14-68)||(36111478-36111532)
[»] chr8 (3 HSPs)
chr8 (22-68)||(32448942-32448988)
chr8 (21-69)||(12703936-12703984)
chr8 (22-50)||(43923294-43923322)
[»] chr7 (5 HSPs)
chr7 (18-68)||(21175961-21176011)
chr7 (14-68)||(42029274-42029328)
chr7 (14-43)||(17272607-17272636)
chr7 (20-72)||(37711356-37711408)
chr7 (16-68)||(38184982-38185034)
[»] chr5 (4 HSPs)
chr5 (14-43)||(1830221-1830250)
chr5 (14-43)||(40315688-40315717)
chr5 (14-43)||(41411822-41411851)
chr5 (20-68)||(26242777-26242824)


Alignment Details
Target: chr6 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 21 - 70
Target Start/End: Original strand, 5400902 - 5400951
Alignment:
Q  21 gtaattgatgaaacttacaattttaaaggggtaacggtctatttactcgt 70  Q
    ||||||||||||||||||||||||||||||| ||  | ||||||||||||    
T  5400902 gtaattgatgaaacttacaattttaaaggggaaattgactatttactcgt 5400951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 21784337 - 21784386
Alignment:
Q  20 ggtaattgatgaaacttacaattttaaaggggtaacggtctatttactcg 69  Q
    |||||||||||||||||||||||| | ||||||||  | |||||||||||    
T  21784337 ggtaattgatgaaacttacaatttcagaggggtaattgactatttactcg 21784386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 15145824 - 15145776
Alignment:
Q  20 ggtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    |||||||||||||||||||||||| ||||||| ||  | ||||||||||    
T  15145824 ggtaattgatgaaacttacaatttcaaaggggaaattgactatttactc 15145776  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 34; Significance: 0.0000000004; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 18 - 63
Target Start/End: Complemental strand, 3362740 - 3362695
Alignment:
Q  18 gaggtaattgatgaaacttacaattttaaaggggtaacggtctatt 63  Q
    ||||||||||| |||||||||||||||||||||||||  |||||||    
T  3362740 gaggtaattgacgaaacttacaattttaaaggggtaattgtctatt 3362695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 3106196 - 3106148
Alignment:
Q  20 ggtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    |||||||||||||||||||||||| | ||||||||  | ||||||||||    
T  3106196 ggtaattgatgaaacttacaatttcagaggggtaattgcctatttactc 3106148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Original strand, 22064705 - 22064753
Alignment:
Q  20 ggtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    |||||||||||||||||||||||| || |||||||  | ||||||||||    
T  22064705 ggtaattgatgaaacttacaatttcaagggggtaattgactatttactc 22064753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 34; Significance: 0.0000000004; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 81
Target Start/End: Original strand, 4514200 - 4514261
Alignment:
Q  20 ggtaattgatgaaacttacaattttaaaggggtaacggtctatttactcgtataaattttgt 81  Q
    |||||||||||||||||||||||||||||||| ||  | |||||||||| | |||| |||||    
T  4514200 ggtaattgatgaaacttacaattttaaaggggaaattgactatttactcatctaaaatttgt 4514261  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 20 - 69
Target Start/End: Original strand, 13158879 - 13158928
Alignment:
Q  20 ggtaattgatgaaacttacaattttaaaggggtaacggtctatttactcg 69  Q
    |||||||||||||||||||||||| || |||||||  |||||||||||||    
T  13158879 ggtaattgatgaaacttacaatttcaagggggtaattgtctatttactcg 13158928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 21 - 68
Target Start/End: Complemental strand, 44097703 - 44097656
Alignment:
Q  21 gtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    |||| |||||||||||||||||||||||||||||  | ||||||||||    
T  44097703 gtaactgatgaaacttacaattttaaaggggtaattgcctatttactc 44097656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Complemental strand, 36111532 - 36111478
Alignment:
Q  14 cagagaggtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    ||||||||||||||| |||||||||||||| | ||||||||  | ||||||||||    
T  36111532 cagagaggtaattgacgaaacttacaatttcagaggggtaattgcctatttactc 36111478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 22 - 68
Target Start/End: Complemental strand, 32448988 - 32448942
Alignment:
Q  22 taattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    ||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  32448988 taattgacgaaacttacaattttcaaggggtaattgtctatttactc 32448942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 21 - 69
Target Start/End: Complemental strand, 12703984 - 12703936
Alignment:
Q  21 gtaattgatgaaacttacaattttaaaggggtaacggtctatttactcg 69  Q
    ||||||||||||||||||||||||||  || |||  |||||||||||||    
T  12703984 gtaattgatgaaacttacaattttaagaggataattgtctatttactcg 12703936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 22 - 50
Target Start/End: Complemental strand, 43923322 - 43923294
Alignment:
Q  22 taattgatgaaacttacaattttaaaggg 50  Q
    |||||||||||||||||||||||||||||    
T  43923322 taattgatgaaacttacaattttaaaggg 43923294  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 68
Target Start/End: Complemental strand, 21176011 - 21175961
Alignment:
Q  18 gaggtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    ||||||||||||||||||||||||||||| |||| ||  | ||||||||||    
T  21176011 gaggtaattgatgaaacttacaattttaagggggaaattgactatttactc 21175961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 14 - 68
Target Start/End: Original strand, 42029274 - 42029328
Alignment:
Q  14 cagagaggtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    ||||| ||||||||||||||||||||||||||| |||| ||  | ||||||||||    
T  42029274 cagaggggtaattgatgaaacttacaattttaagggggaaattgactatttactc 42029328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 17272607 - 17272636
Alignment:
Q  14 cagagaggtaattgatgaaacttacaattt 43  Q
    ||||||||||||||||||||||||||||||    
T  17272607 cagagaggtaattgatgaaacttacaattt 17272636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 72
Target Start/End: Original strand, 37711356 - 37711408
Alignment:
Q  20 ggtaattgatgaaacttacaattttaaaggggtaacggtctatttactcgtat 72  Q
    ||||||||| |||||||||||||| ||||||| ||  | ||||||||||||||    
T  37711356 ggtaattgacgaaacttacaatttcaaaggggaaattgactatttactcgtat 37711408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 16 - 68
Target Start/End: Original strand, 38184982 - 38185034
Alignment:
Q  16 gagaggtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    ||||||||||||| |||||||||||||| ||||||| ||  | ||||||||||    
T  38184982 gagaggtaattgacgaaacttacaatttcaaaggggaaattgactatttactc 38185034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 30; Significance: 0.00000009; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 1830221 - 1830250
Alignment:
Q  14 cagagaggtaattgatgaaacttacaattt 43  Q
    ||||||||||||||||||||||||||||||    
T  1830221 cagagaggtaattgatgaaacttacaattt 1830250  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Original strand, 40315688 - 40315717
Alignment:
Q  14 cagagaggtaattgatgaaacttacaattt 43  Q
    ||||||||||||||||||||||||||||||    
T  40315688 cagagaggtaattgatgaaacttacaattt 40315717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 14 - 43
Target Start/End: Complemental strand, 41411851 - 41411822
Alignment:
Q  14 cagagaggtaattgatgaaacttacaattt 43  Q
    ||||||||||||||||||||||||||||||    
T  41411851 cagagaggtaattgatgaaacttacaattt 41411822  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 68
Target Start/End: Complemental strand, 26242824 - 26242777
Alignment:
Q  20 ggtaattgatgaaacttacaattttaaaggggtaacggtctatttactc 68  Q
    ||||||||| ||||||||||||||| |||||||||  ||||||||||||    
T  26242824 ggtaattgacgaaacttacaatttt-aaggggtaattgtctatttactc 26242777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University