View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20248_high_17 (Length: 248)
Name: NF20248_high_17
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_high_17 |
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Alignment Details
Target: chr2 (Bit Score: 219; Significance: 1e-120; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 219; E-Value: 1e-120
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 45393116 - 45393338
Alignment:
| Q |
1 |
tatgttcaataaatatgattacggcataaggctctcaacaacatgatcaaacaatgtatgagtttcatgcctcaagtaattattagtagcaagcacttta |
100 |
Q |
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| T |
45393116 |
tatgttcaataaatatgattacggcataaggctctcaacaacatgatcaaacaatgtatgagtttcatgcctcaagtaattattagtagcaagcacttta |
45393215 |
T |
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| Q |
101 |
acgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtggcgaaaactatcaatctttcc |
200 |
Q |
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| T |
45393216 |
acgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtggtgaaaactatcaatctttcc |
45393315 |
T |
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| Q |
201 |
catccaaatgcagactatgaaac |
223 |
Q |
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| T |
45393316 |
catccaaatgcagactatgaaac |
45393338 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 76 - 126
Target Start/End: Original strand, 52739739 - 52739789
Alignment:
| Q |
76 |
gtaattattagtagcaagcactttaacgctacaataggaaagttcaatatg |
126 |
Q |
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| T |
52739739 |
gtaattattagcagcaaacactttaaaactacaacaggaaagttcaatatg |
52739789 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 80 - 207
Target Start/End: Original strand, 31667166 - 31667289
Alignment:
| Q |
80 |
ttattagtagcaagcactttaacgctacaataggaaagttcaatatgctagtccccatctgataagtgcagcaggatcaagcatctgcacatagttggtg |
179 |
Q |
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| T |
31667166 |
ttattagcggcaagcactttaaaactacaccaggaaagttcaatatgcctgt-cccttctgataagt---gcaggatcaagcttctacacattattattt |
31667261 |
T |
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| Q |
180 |
gcgaaaactatcaatctttcccatccaa |
207 |
Q |
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|||||||| ||||| |||| |||||||| |
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| T |
31667262 |
gcgaaaacaatcaaccttttccatccaa |
31667289 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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