View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20248_high_18 (Length: 247)

Name: NF20248_high_18
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20248_high_18
NF20248_high_18
[»] chr6 (1 HSPs)
chr6 (10-247)||(34218141-34218378)
[»] chr8 (2 HSPs)
chr8 (62-247)||(2682406-2682591)
chr8 (10-60)||(2681814-2681862)
[»] chr4 (2 HSPs)
chr4 (62-247)||(5480720-5480905)
chr4 (10-60)||(5481449-5481497)
[»] chr2 (2 HSPs)
chr2 (62-247)||(45005832-45006017)
chr2 (10-60)||(45005240-45005288)
[»] chr1 (1 HSPs)
chr1 (72-247)||(27147258-27147440)


Alignment Details
Target: chr6 (Bit Score: 201; Significance: 1e-110; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 201; E-Value: 1e-110
Query Start/End: Original strand, 10 - 247
Target Start/End: Complemental strand, 34218378 - 34218141
Alignment:
Q  10 aaaataaaataagctgagaaggtggaaacacaaagagcatagacagatgagatttaaatgagatttgtttcccttgattcttgatccctgaaaatttgca 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34218378 aaaataaaataagctgagaaggtggaaacacaaagagcatagacagatgagatttaaatgagatttgtttcccttgattcttgatccctgaaaatttgca 34218279  T
Q  110 agagatcactattataatagacattataattattatataaaggatcgcccttcgatacaaacctggannnnnnncttggtgtaaggcacttcactgttac 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||        ||||||||||||||||||||||| ||    
T  34218278 agagatcactattataatagacattataattattatataaaggatcacccttcgatacaaacctgggtttttttcttggtgtaaggcacttcactgtcac 34218179  T
Q  210 ctgcgaaatacataaccactgaatttcaaactctgttc 247  Q
    |||| |||||||||||||||||||||||||||||||||    
T  34218178 ctgcaaaatacataaccactgaatttcaaactctgttc 34218141  T

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Target: chr8 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 2682406 - 2682591
Alignment:
Q  62 tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcgccctt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  2682406 tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcaccctt 2682505  T
Q  162 cgatacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaaactctgttc 247  Q
    ||||||||||||||        |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  2682506 cgatacaaacctgggtttttttcttggtgtaaggcactgcactgttacctgcaaaatacataaccactgaatttcaaactctgttc 2682591  T

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Target: chr8; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 2681814 - 2681862
Alignment:
Q  10 aaaataaaataagctgagaaggtggaaacacaaagagcatagacagatgag 60  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  2681814 aaaataaaataagctgagatggtggaaacac--agagcatagacagatgag 2681862  T

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Target: chr4 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 62 - 247
Target Start/End: Complemental strand, 5480905 - 5480720
Alignment:
Q  62 tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcgccctt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  5480905 tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcaccctt 5480806  T
Q  162 cgatacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaaactctgttc 247  Q
    ||||||||||||||        |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  5480805 cgatacaaacctgggtttttttcttggtgtaaggcactgcactgttacctgcaaaatacataaccactgaatttcaaactctgttc 5480720  T

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Target: chr4; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Complemental strand, 5481497 - 5481449
Alignment:
Q  10 aaaataaaataagctgagaaggtggaaacacaaagagcatagacagatgag 60  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  5481497 aaaataaaataagctgagatggtggaaacac--agagcatagacagatgag 5481449  T

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Target: chr2 (Bit Score: 149; Significance: 8e-79; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 149; E-Value: 8e-79
Query Start/End: Original strand, 62 - 247
Target Start/End: Original strand, 45005832 - 45006017
Alignment:
Q  62 tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcgccctt 161  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  45005832 tttaaatgagatttgtttcccttgattcttgatccctgaaaatttgcaagagatcactattataatagacattataattattatataaaggatcaccctt 45005931  T
Q  162 cgatacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaaactctgttc 247  Q
    ||||||||||||||        |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  45005932 cgatacaaacctgggtttttttcttggtgtaaggcactgcactgttacctgcaaaatacataaccactgaatttcaaactctgttc 45006017  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 10 - 60
Target Start/End: Original strand, 45005240 - 45005288
Alignment:
Q  10 aaaataaaataagctgagaaggtggaaacacaaagagcatagacagatgag 60  Q
    ||||||||||||||||||| |||||||||||  ||||||||||||||||||    
T  45005240 aaaataaaataagctgagatggtggaaacac--agagcatagacagatgag 45005288  T

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Target: chr1 (Bit Score: 96; Significance: 3e-47; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 72 - 247
Target Start/End: Complemental strand, 27147440 - 27147258
Alignment:
Q  72 atttgtttcccttgattcttgatccctgaaaatttgcaagagatcactatt-------ataatagacattataattattatataaaggatcgcccttcga 164  Q
    |||||||||||||||||||||||||||||||||||||||  ||||||||||       | |||||||||||||||||||||||||| |||| ||||||      
T  27147440 atttgtttcccttgattcttgatccctgaaaatttgcaattgatcactatttaatgtaaaaatagacattataattattatataaaagatcacccttcac 27147341  T
Q  165 tacaaacctggannnnnnncttggtgtaaggcacttcactgttacctgcgaaatacataaccactgaatttcaaactctgttc 247  Q
    |||||||||||        |||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||    
T  27147340 tacaaacctgggtttttttcttggtgtaaggcactgcactgttacctgcaaaatacataaccactgaatttcaaactctgttc 27147258  T

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