View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20248_high_19 (Length: 243)

Name: NF20248_high_19
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20248_high_19
NF20248_high_19
[»] chr4 (16 HSPs)
chr4 (20-229)||(8447638-8447847)
chr4 (19-229)||(8443438-8443648)
chr4 (35-217)||(10460517-10460699)
chr4 (58-221)||(10482096-10482259)
chr4 (154-212)||(6392835-6392893)
chr4 (100-219)||(53774797-53774916)
chr4 (35-228)||(10464158-10464354)
chr4 (147-221)||(10468046-10468120)
chr4 (147-222)||(837780-837855)
chr4 (107-221)||(10571268-10571382)
chr4 (160-221)||(829589-829650)
chr4 (60-213)||(6388157-6388310)
chr4 (149-213)||(6372451-6372515)
chr4 (63-175)||(10475127-10475239)
chr4 (44-121)||(6392721-6392799)
chr4 (160-228)||(10493694-10493762)
[»] chr3 (3 HSPs)
chr3 (22-221)||(25915289-25915488)
chr3 (22-219)||(25901273-25901470)
chr3 (101-202)||(36340073-36340174)
[»] chr1 (1 HSPs)
chr1 (19-222)||(50645476-50645679)
[»] chr2 (2 HSPs)
chr2 (97-214)||(25377028-25377145)
chr2 (100-204)||(20975515-20975619)
[»] scaffold0867 (1 HSPs)
scaffold0867 (111-219)||(4663-4771)
[»] chr7 (14 HSPs)
chr7 (111-219)||(22100461-22100569)
chr7 (44-203)||(26256676-26256835)
chr7 (111-219)||(22063610-22063718)
chr7 (103-197)||(15571911-15572005)
chr7 (100-198)||(16839396-16839494)
chr7 (100-198)||(16846479-16846577)
chr7 (109-219)||(22070077-22070187)
chr7 (109-219)||(22080834-22080944)
chr7 (97-219)||(24002153-24002275)
chr7 (100-213)||(1985955-1986068)
chr7 (44-76)||(26237515-26237547)
chr7 (100-219)||(19344569-19344688)
chr7 (97-219)||(24010337-24010459)
chr7 (147-215)||(660845-660913)
[»] chr6 (7 HSPs)
chr6 (100-213)||(6935218-6935331)
chr6 (100-213)||(6947880-6947993)
chr6 (101-202)||(5978985-5979086)
chr6 (101-202)||(33568942-33569043)
chr6 (100-211)||(6954521-6954632)
chr6 (96-202)||(33576123-33576229)
chr6 (100-176)||(24254463-24254539)
[»] scaffold0707 (1 HSPs)
scaffold0707 (101-202)||(5336-5437)
[»] chr8 (1 HSPs)
chr8 (147-179)||(42846459-42846491)


Alignment Details
Target: chr4 (Bit Score: 162; Significance: 1e-86; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 162; E-Value: 1e-86
Query Start/End: Original strand, 20 - 229
Target Start/End: Complemental strand, 8447847 - 8447638
Alignment:
Q  20 tctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgttt 119  Q
    |||||||||||| | |||||||||||||||||||||| |||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  8447847 tctccaccgagtcacacactcagctgttgttgcctcagggttttgatgaggtgccatgacatcatccgacacttgcagttttgatggactgtctttgttt 8447748  T
Q  120 ttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaat 219  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||  ||||||||||||||||||||||||| | ||||||||||    
T  8447747 ttcatatgatttcaagagaactcatcattttatttggcagatgaaggatttcggagttcatgagtcttggattcaattatttaaaattaattatcagaat 8447648  T
Q  220 ttactttcat 229  Q
    ||| ||||||    
T  8447647 ttattttcat 8447638  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 159; E-Value: 9e-85
Query Start/End: Original strand, 19 - 229
Target Start/End: Complemental strand, 8443648 - 8443438
Alignment:
Q  19 ctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtt 118  Q
    ||||||||||||| | ||||||||||| |||||||||| ||| ||||| ||| ||||||||||||||| |||||||||||||||||||||||||||||||    
T  8443648 ctctccaccgagtcacacactcagctgctgttgcctcagggtgttgataaggggccatgtcatcagccaacacttgcagttttgatggactgtctttgtt 8443549  T
Q  119 tttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaa 218  Q
    |||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||    
T  8443548 tttcttatgatttcaagagaactcattatgttatttggcagatgaaggattttggagttcacgagtcttggattcaattatttaaaattagttatcagaa 8443449  T
Q  219 tttactttcat 229  Q
    |||| ||||||    
T  8443448 tttattttcat 8443438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 35 - 217
Target Start/End: Original strand, 10460517 - 10460699
Alignment:
Q  35 acactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaa 134  Q
    |||||||||||||||||||||  ||||| |||||||||||| || ||||||| |||||||  ||||||||||||||||||||||| || |||||||| ||    
T  10460517 acactcagctgttgttgcctcggggtttcgatgaggtgccacgttatcagccaacacttgtggttttgatggactgtctttgtttctcttatgattttaa 10460616  T
Q  135 gagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcaga 217  Q
    | ||||||||  ||| || || ||||||||| |||||||||||||| |||| |||| |||||||||||  || ||||||||||    
T  10460617 gggaactcattttgtgatatgacagatgaagaattttggagttcacgagtcatggactcaattatttattattagttatcaga 10460699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 58 - 221
Target Start/End: Original strand, 10482096 - 10482259
Alignment:
Q  58 ggttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggc 157  Q
    |||||| || ||||| || ||||||| || |  ||||| ||||||||||| ||||||||||||    ||||||   ||  |||| ||  |||||| ||||    
T  10482096 ggttttaataaggtgtcacgtcatcaaccaaagcttgcggttttgatggattgtctttgttttggtcatgattatgaggaaacttattttgttatatggc 10482195  T
Q  158 agatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaattt 221  Q
    | ||||||||||||||||||||   |||||||||||||||||||||||| | ||||||||||||    
T  10482196 aaatgaaggattttggagttcagtcgtcttggattcaattatttaaaattacttatcagaattt 10482259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 154 - 212
Target Start/End: Original strand, 6392835 - 6392893
Alignment:
Q  154 tggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagtta 212  Q
    ||||| ||||||||||||||||||||| ||||||||||||||||||||||||| |||||    
T  6392835 tggcaaatgaaggattttggagttcacgagtcttggattcaattatttaaaattagtta 6392893  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 100 - 219
Target Start/End: Original strand, 53774797 - 53774916
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 199  Q
    |||||||| ||| |||||||||| |||||||| ||   |||||||  |||||| ||||| |||||||| ||||||||| |  ||||||||| ||||||      
T  53774797 ttgatggattgtatttgtttttcttatgattttaaagaaactcattttgttatatggcaaatgaaggaatttggagttgaagagtcttggactcaattcc 53774896  T
Q  200 ttaaaataagttatcagaat 219  Q
    ||||||| ||||||||||||    
T  53774897 ttaaaattagttatcagaat 53774916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 35 - 228
Target Start/End: Original strand, 10464158 - 10464354
Alignment:
Q  35 acactcagctgttgttgcctcaaggttttgatga---ggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgattt 131  Q
    ||||||| |||||| ||||||  |||||||||||   |||||||  | ||||||| |  ||||  ||||||||||| |||||||||||||  ||||||||    
T  10464158 acactcaactgttgctgcctcggggttttgatgatgaggtgccagattatcagccaaggcttgtggttttgatggattgtctttgtttttgttatgattt 10464257  T
Q  132 caagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaatttactttca 228  Q
    | | |  || |||  |||||| ||||| |||||||||||||| | |||  |||||||||||||||| | |||| |  ||||| |||||||| |||||    
T  10464258 ccaaaatacccattttgttatatggcaaatgaaggattttggggatcaggagtcttggattcaattgtataaagttggttataagaatttattttca 10464354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 147 - 221
Target Start/End: Original strand, 10468046 - 10468120
Alignment:
Q  147 tgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaattt 221  Q
    |||||| ||||| ||||||||||||||||||||   |||||||||||||||||||||||| | |||| |||||||    
T  10468046 tgttatatggcaaatgaaggattttggagttcagtcgtcttggattcaattatttaaaattacttataagaattt 10468120  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 147 - 222
Target Start/End: Original strand, 837780 - 837855
Alignment:
Q  147 tgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaattta 222  Q
    |||||| ||||| |||||| ||||||| |||||  ||||||||||||||||||||||||| || ||||| ||||||    
T  837780 tgttatatggcaaatgaagaattttggtgttcaagagtcttggattcaattatttaaaattagctatcataattta 837855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 107 - 221
Target Start/End: Complemental strand, 10571382 - 10571268
Alignment:
Q  107 actgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaat 206  Q
    |||||||||| ||||   ||||||||||| ||| ||||| |||| | ||| | ||||  ||||||||||||||  ||||||||||||| || ||||||||    
T  10571382 actgtctttgcttttgtcatgatttcaagggaagtcatcttgttttatggaaaatgacagattttggagttcaagagtcttggattcagttgtttaaaat 10571283  T
Q  207 aagttatcagaattt 221  Q
     |||||| |||||||    
T  10571282 tagttatgagaattt 10571268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 160 - 221
Target Start/End: Complemental strand, 829650 - 829589
Alignment:
Q  160 atgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaattt 221  Q
    |||||||||||||| |||||  |||||||| |||||||||||||||| |||||||| |||||    
T  829650 atgaaggattttggtgttcaagagtcttgggttcaattatttaaaattagttatcataattt 829589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 60 - 213
Target Start/End: Original strand, 6388157 - 6388310
Alignment:
Q  60 ttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcag 159  Q
    ||||||| |||| ||| || ||||||| |  ||||  |||||||||| ||||||||||||||   |||||||  ||  |||||||  |||||| |||||     
T  6388157 ttttgataaggttccacgttatcagccaaagcttgttgttttgatgggctgtctttgtttttgtcatgattttgaggaaactcattctgttatatggcaa 6388256  T
Q  160 atgaaggattttggagttcacaagtcttggattcaattatttaaaataagttat 213  Q
    |||||||||||||| |  ||  |||||||||||||| |||| ||||| ||||||    
T  6388257 atgaaggattttggcgcccaagagtcttggattcaactattaaaaattagttat 6388310  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 149 - 213
Target Start/End: Original strand, 6372451 - 6372515
Alignment:
Q  149 ttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttat 213  Q
    |||| ||||| |||||||||| |||||||||  |||||| ||||||||||| |||||| ||||||    
T  6372451 ttatatggcaaatgaaggattctggagttcaagagtcttagattcaattatataaaattagttat 6372515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 63 - 175
Target Start/End: Original strand, 10475127 - 10475239
Alignment:
Q  63 tgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatg 162  Q
    |||||||||||||  | ||||||| |  ||||  ||||||||||| |||||||||||||  ||||||||| | |  || |||  |||||| ||||| |||    
T  10475127 tgatgaggtgccaaattatcagccaaggcttgtggttttgatggattgtctttgtttttgttatgatttccaaaatacccattttgttatatggcaaatg 10475226  T
Q  163 aaggattttggag 175  Q
    |||||||||||||    
T  10475227 aaggattttggag 10475239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 121
Target Start/End: Original strand, 6392721 - 6392799
Alignment:
Q  44 tgttgttgcctcaaggttttga-tgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgttttt 121  Q
    ||||| |||||||| ||||| | | ||||||||||| |||| |||| |||||  ||||||||||||| |||||||||||    
T  6392721 tgttgctgcctcaatgtttttaataaggtgccatgttatcaaccgaaacttgtggttttgatggactttctttgttttt 6392799  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 228
Target Start/End: Original strand, 10493694 - 10493762
Alignment:
Q  160 atgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaatttactttca 228  Q
    ||||| |||||| ||| |||  |||||||||||||||||| ||||||  ||||| |||||||| |||||    
T  10493694 atgaaagattttcgagatcatgagtcttggattcaattatataaaattggttataagaatttattttca 10493762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 60; Significance: 1e-25; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 22 - 221
Target Start/End: Complemental strand, 25915488 - 25915289
Alignment:
Q  22 tccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgttttt 121  Q
    ||||| |||| | |||||||| ||||| ||||||  |||||||| ||||||||| ||  |||||| ||| |||  |||||||||||||  |||||||||     
T  25915488 tccactgagtcatacactcagttgttgctgcctcggggttttgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttgttttg 25915389  T
Q  122 catatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaattt 221  Q
       ||||||||||| |||  |||  |||||| ||| | |||||||||||| |||||||  |||||||||||||||| || ||||| ||||||||||||||    
T  25915388 gtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaattt 25915289  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 22 - 219
Target Start/End: Complemental strand, 25901470 - 25901273
Alignment:
Q  22 tccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgttttt 121  Q
    ||||| |||| | |||||||| ||||| | ||||  |||||||| ||||||||| ||  |||||| ||| |||  |||||||||||||  |||||||||     
T  25901470 tccactgagtcatacactcagttgttgctacctcggggttttgacgaggtgccacgtgttcagccaacaattgtggttttgatggactccctttgttttg 25901371  T
Q  122 catatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaat 219  Q
       ||||||||||| |||  |||  |||||| ||| | |||||||||||| |||||||  |||||||||||||||| || ||||| ||||||||||||    
T  25901370 gtcatgatttcaagggaagccattttgttatatggaaaatgaaggattttcgagttcaagagtcttggattcaattgttaaaaattagttatcagaat 25901273  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 36340073 - 36340174
Alignment:
Q  101 tgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatt 200  Q
    |||||||||| ||||| |||||| | ||||||||||||||| |   ||| || |||||||||||||| ||||||  |||  ||||||||| ||| |||||    
T  36340073 tgatggactgcctttgcttttcacacgatttcaagagaactgaatttgtgatatggcagatgaaggagtttggatctcaagagtcttggactcagttatt 36340172  T
Q  201 ta 202  Q
    ||    
T  36340173 ta 36340174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 52; Significance: 6e-21; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 19 - 222
Target Start/End: Complemental strand, 50645679 - 50645476
Alignment:
Q  19 ctctccaccgagttagacactcagctgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtt 118  Q
    ||||||||||||  | ||||||| |||||| ||||||  |||||| |  || | ||| || ||||||| ||||||   ||||| | ||||  |||||||     
T  50645679 ctctccaccgagacatacactcaactgttgctgcctcggggttttcacaagcttccacgttatcagccaacacttaaggttttaagggacaatctttgta 50645580  T
Q  119 tttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatcagaa 218  Q
    |||   |||||||  || ||||||||  |||||| ||||| ||||||||||||||||||||  ||||||||||||||||||||||||| |||||| | ||    
T  50645579 tttttcatgattttgagggaactcattttgttatgtggcaaatgaaggattttggagttcaagagtcttggattcaattatttaaaattagttataacaa 50645480  T
Q  219 ttta 222  Q
    ||||    
T  50645479 ttta 50645476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 46; Significance: 2e-17; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 97 - 214
Target Start/End: Original strand, 25377028 - 25377145
Alignment:
Q  97 gttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaat 196  Q
    ||||||| |||||||||||||||||   |||||||  ||  ||  |||  |||||| |||  |||||||||||||||||||||  |||||||||||||||    
T  25377028 gttttgacggactgtctttgtttttgtcatgatttggaggaaaaccattttgttatatggatgatgaaggattttggagttcaagagtcttggattcaat 25377127  T
Q  197 tatttaaaataagttatc 214  Q
    |||||||||| |||||||    
T  25377128 tatttaaaattagttatc 25377145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 100 - 204
Target Start/End: Original strand, 20975515 - 20975619
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 199  Q
    |||||| |||||||||||||| || || ||| |||| ||| ||||  |||||| ||||| |||| ||| ||||||||| |  | |||||||||||||| |    
T  20975515 ttgatgaactgtctttgttttacacattattccaagggaaatcattttgttatatggcaaatgagggaatttggagttgaagattcttggattcaattgt 20975614  T
Q  200 ttaaa 204  Q
    |||||    
T  20975615 ttaaa 20975619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0867 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: scaffold0867
Description:

Target: scaffold0867; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 219
Target Start/End: Complemental strand, 4771 - 4663
Alignment:
Q  111 tctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagt 210  Q
    ||||||||||||  |||||||||| | |||||||  | |||| ||||| |||||| | |||||||||||  ||||||||| ||| ||||| ||||| |||    
T  4771 tctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagt 4672  T
Q  211 tatcagaat 219  Q
    |||||||||    
T  4671 tatcagaat 4663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 14)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 22100461 - 22100569
Alignment:
Q  111 tctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagt 210  Q
    ||||||||||||  |||||||||| | |||||||  | |||| ||||| |||||| | |||||||||||  ||||||||| ||| ||||| ||||| |||    
T  22100461 tctttgtttttctcatgatttcaaaaaaactcattttattatatggcaaatgaagaaatttggagttcaagagtcttggactcagttattcaaaattagt 22100560  T
Q  211 tatcagaat 219  Q
    |||||||||    
T  22100561 tatcagaat 22100569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 44 - 203
Target Start/End: Original strand, 26256676 - 26256835
Alignment:
Q  44 tgttgttgcctcaaggttttgatgaggtgccatgtcatcagccgacacttgcagttttgatggactgtctttgtttttcatatgatttcaagagaactca 143  Q
    ||||| ||||||||||||||||||||||||||| |  ||||||    |||   ||||||||||| || |||||||||||  |||||  ||||  || | |    
T  26256676 tgttgctgcctcaaggttttgatgaggtgccatttgttcagccagttcttaaggttttgatggaatgcctttgtttttctcatgataccaaggaaaatga 26256775  T
Q  144 tcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaa 203  Q
    |  |||| | |||||||||||||| | |||||||||  ||||||||| ||||||||||||    
T  26256776 ttttgttttatggcagatgaaggagtatggagttcaagagtcttggactcaattatttaa 26256835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 111 - 219
Target Start/End: Original strand, 22063610 - 22063718
Alignment:
Q  111 tctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagt 210  Q
    |||||||||||   ||||||||||   |||||||  |||||| ||||| |||||||| |||||| ||||  ||||||||| ||| ||||| ||||| |||    
T  22063610 tctttgtttttttcatgatttcaaacaaactcattttgttatatggcaaatgaaggaatttggatttcaagagtcttggactcagttattcaaaattagt 22063709  T
Q  211 tatcagaat 219  Q
    |||||||||    
T  22063710 tatcagaat 22063718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 103 - 197
Target Start/End: Complemental strand, 15572005 - 15571911
Alignment:
Q  103 atggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatt 197  Q
    ||||| |||||||||||||| |||||||||||| |||| |||  ||| || ||||| |||| ||| ||||||||| |  |||||||| |||||||    
T  15572005 atggattgtctttgtttttcttatgatttcaagggaacccattttgtcatgtggcaaatgagggagtttggagttgaagagtcttgggttcaatt 15571911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 16839494 - 16839396
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatta 198  Q
    ||||||||||| |||||||||||  ||| | | |||| |||||||| |||||| ||| ||||||  |||| |||||||||  ||||||||| |||||||    
T  16839494 ttgatggactgcctttgtttttctcatgttgttaagaaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatta 16839396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 198
Target Start/End: Complemental strand, 16846577 - 16846479
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaatta 198  Q
    ||||||||||| |||||||||||  ||| | |||||  |||||||| |||||| ||| ||||||  |||| |||||||||  ||||||||| |||||||    
T  16846577 ttgatggactgcctttgtttttctcatgttgtcaagcaaactcatcttgttatatggaagatgacagattatggagttcaagagtcttggactcaatta 16846479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 22070077 - 22070187
Alignment:
Q  109 tgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataa 208  Q
    ||||||||||||||  ||||||||||  ||||||||  | |||| ||||| |||||| | |||||||||||  ||||||||| ||  ||||| ||||| |    
T  22070077 tgtctttgtttttctcatgatttcaaacgaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaatta 22070176  T
Q  209 gttatcagaat 219  Q
    ||||| |||||    
T  22070177 gttataagaat 22070187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 109 - 219
Target Start/End: Original strand, 22080834 - 22080944
Alignment:
Q  109 tgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataa 208  Q
    ||||||||||||||  ||||||||||   |||||||  | |||| ||||| |||||| | |||||||||||  ||||||||| ||  ||||| ||||| |    
T  22080834 tgtctttgtttttctcatgatttcaaacaaactcattttattatatggcaaatgaagcaatttggagttcaagagtcttggactcggttattcaaaatta 22080933  T
Q  209 gttatcagaat 219  Q
    |||||||||||    
T  22080934 gttatcagaat 22080944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 24002153 - 24002275
Alignment:
Q  97 gttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaat 196  Q
    |||||||||||| || |||||||||   |||||| |||||||||| |   |||| | ||||| |||||||| |  ||||||||  ||||||||| |||||    
T  24002153 gttttgatggacggtatttgtttttatcatgattccaagagaactgaatttgttttatggcatatgaaggagtacggagttcaagagtcttggactcaat 24002252  T
Q  197 tatttaaaataagttatcagaat 219  Q
    || |||| || ||||||||||||    
T  24002253 tacttaagattagttatcagaat 24002275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 1986068 - 1985955
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 199  Q
    |||||||| || || | |||||| ||||||||||||| ||| |||  |||| ||||||| |||||||| ||||| ||| |  | ||||||| |||||| |    
T  1986068 ttgatggattgcctctatttttcttatgatttcaagaaaacccattttgttctttggcaaatgaaggaatttggcgttgaagaatcttggactcaattgt 1985969  T
Q  200 ttaaaataagttat 213  Q
    ||||||| ||||||    
T  1985968 ttaaaattagttat 1985955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 44 - 76
Target Start/End: Original strand, 26237515 - 26237547
Alignment:
Q  44 tgttgttgcctcaaggttttgatgaggtgccat 76  Q
    |||||||||||||||||||||||||||||||||    
T  26237515 tgttgttgcctcaaggttttgatgaggtgccat 26237547  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 19344688 - 19344569
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 199  Q
    ||||||||||| |||||||||||  |  || ||||||  ||||||  |||||| |||||||||| ||| ||||||||| |  | ||||||| ||||||      
T  19344688 ttgatggactgcctttgtttttctcacaatctcaagaacactcattttgttatatggcagatgatggaatttggagttgaacaatcttggactcaatttc 19344589  T
Q  200 ttaaaataagttatcagaat 219  Q
    ||||||| |||| |||||||    
T  19344588 ttaaaattagttttcagaat 19344569  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 97 - 219
Target Start/End: Original strand, 24010337 - 24010459
Alignment:
Q  97 gttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaat 196  Q
    |||||||||||| || |||||||||   |||||| |||||||||| |   |||| | ||||| |||||||| |  || |||||  ||||||||| |||||    
T  24010337 gttttgatggacggtatttgtttttatcatgattccaagagaactgaatttgttttatggcatatgaaggagtacggggttcaagagtcttggactcaat 24010436  T
Q  197 tatttaaaataagttatcagaat 219  Q
    || |||| || ||||||||||||    
T  24010437 tacttaagattagttatcagaat 24010459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 215
Target Start/End: Complemental strand, 660913 - 660845
Alignment:
Q  147 tgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatttaaaataagttatca 215  Q
    |||||| |||||||||||||| ||| ||||| |  ||||||||| ||||||  ||||||| ||||||||    
T  660913 tgttatatggcagatgaaggaatttcgagttgaagagtcttggactcaattccttaaaattagttatca 660845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000001; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 6935331 - 6935218
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 199  Q
    |||||||| || || | |||||| |||||||| |||| ||| ||| ||||||||||||| |||||||| |||||||||||  | ||||||| | ||||      
T  6935331 ttgatggattgcctctatttttcttatgattttaagaaaacccattatgttatttggcaaatgaaggaatttggagttcaagaatcttggactaaattcc 6935232  T
Q  200 ttaaaataagttat 213  Q
    ||||||| ||||||    
T  6935231 ttaaaattagttat 6935218  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 100 - 213
Target Start/End: Complemental strand, 6947993 - 6947880
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 199  Q
    |||||||| || |||||||||||| |||||||||||| ||| ||   |||| ||||||| |||||||| ||||||||| |  | ||||||| ||||||      
T  6947993 ttgatggattgcctttgtttttcacatgatttcaagaaaacccactttgttctttggcaaatgaaggaatttggagttgaagaatcttggactcaattcc 6947894  T
Q  200 ttaaaataagttat 213  Q
    ||||||| ||||||    
T  6947893 ttaaaattagttat 6947880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 5978985 - 5979086
Alignment:
Q  101 tgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatt 200  Q
    ||||||| |||||||| |||||  ||||||||||||||||  |   |||||| |||| ||||||||| |||||||| ||  ||||||||| ||| |||||    
T  5978985 tgatggattgtctttgcttttcgcatgatttcaagagaaccgaatttgttatatggctgatgaaggagtttggagtccaagagtcttggactcagttatt 5979084  T
Q  201 ta 202  Q
    ||    
T  5979085 ta 5979086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 33568942 - 33569043
Alignment:
Q  101 tgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatt 200  Q
    ||||||||||| ||||||||||  | ||||||||||| ||| |   ||| || ||| ||||||| || |||||||||||| ||||||||| ||| |||||    
T  33568942 tgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttatt 33569041  T
Q  201 ta 202  Q
    ||    
T  33569042 ta 33569043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 100 - 211
Target Start/End: Complemental strand, 6954632 - 6954521
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattat 199  Q
    |||||||| || || ||||| || ||||||||||| | ||| |||  |||||||||||| |||||||| ||||||||| |  | ||||||| ||||||      
T  6954632 ttgatggattgcctctgtttatcttatgatttcaacaaaacccattttgttatttggcaaatgaaggaatttggagttgaagaatcttggactcaattga 6954533  T
Q  200 ttaaaataagtt 211  Q
    ||||||| ||||    
T  6954532 ttaaaattagtt 6954521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 202
Target Start/End: Original strand, 33576123 - 33576229
Alignment:
Q  96 agttttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaa 195  Q
    |||| |||||||||| |||||||||||  | ||||| ||| ||||| |   |||||| |||  ||||||||| |||||||||||  ||||||||| |||     
T  33576123 agttctgatggactgcctttgtttttcgcacgattttaagggaactgaatttgttatatggatgatgaaggagtttggagttcaagagtcttggactcag 33576222  T
Q  196 ttattta 202  Q
    |||||||    
T  33576223 ttattta 33576229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 100 - 176
Target Start/End: Complemental strand, 24254539 - 24254463
Alignment:
Q  100 ttgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagt 176  Q
    ||||||||||| |||||||||||  |  || ||||||||||||||  |||||| |||||||||  ||| ||||||||    
T  24254539 ttgatggactgcctttgtttttctcactatatcaagagaactcattttgttatatggcagatgtcggaatttggagt 24254463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0707 (Bit Score: 34; Significance: 0.0000000003; HSPs: 1)
Name: scaffold0707
Description:

Target: scaffold0707; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 101 - 202
Target Start/End: Original strand, 5336 - 5437
Alignment:
Q  101 tgatggactgtctttgtttttcatatgatttcaagagaactcatcatgttatttggcagatgaaggattttggagttcacaagtcttggattcaattatt 200  Q
    ||||||||||| ||||||||||  | ||||||||||| ||| |   ||| || ||| ||||||| || |||||||||||| ||||||||| ||| |||||    
T  5336 tgatggactgtttttgtttttcgcacgatttcaagaggactgaatttgtcatatggaagatgaatgagtttggagttcacgagtcttggagtcagttatt 5435  T
Q  201 ta 202  Q
    ||    
T  5436 ta 5437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 147 - 179
Target Start/End: Complemental strand, 42846491 - 42846459
Alignment:
Q  147 tgttatttggcagatgaaggattttggagttca 179  Q
    |||||||||||| ||||||||||||||||||||    
T  42846491 tgttatttggcaaatgaaggattttggagttca 42846459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University