View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20248_high_2 (Length: 644)

Name: NF20248_high_2
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20248_high_2
NF20248_high_2
[»] chr5 (13 HSPs)
chr5 (277-628)||(38060990-38061342)
chr5 (277-628)||(38596440-38596791)
chr5 (278-628)||(38552024-38552373)
chr5 (105-236)||(38177751-38177882)
chr5 (105-236)||(38204975-38205106)
chr5 (105-234)||(35292046-35292175)
chr5 (108-236)||(35395658-35395786)
chr5 (105-234)||(43317732-43317861)
chr5 (174-236)||(32838236-32838298)
chr5 (105-178)||(32837009-32837082)
chr5 (106-236)||(18728268-18728398)
chr5 (106-236)||(32087842-32087972)
chr5 (106-233)||(33256730-33256857)
[»] chr2 (11 HSPs)
chr2 (105-236)||(37417612-37417743)
chr2 (105-236)||(42879650-42879781)
chr2 (109-236)||(92016-92143)
chr2 (106-225)||(42001954-42002072)
chr2 (106-236)||(39064-39194)
chr2 (173-234)||(39859-39920)
chr2 (106-236)||(29909328-29909458)
chr2 (116-222)||(15432673-15432779)
chr2 (173-234)||(41706866-41706927)
chr2 (173-231)||(15372838-15372896)
chr2 (190-236)||(25619997-25620043)
[»] chr8 (8 HSPs)
chr8 (105-232)||(42897432-42897559)
chr8 (106-233)||(37525687-37525814)
chr8 (108-231)||(8654836-8654958)
chr8 (106-236)||(33750050-33750180)
chr8 (116-235)||(31821737-31821856)
chr8 (190-236)||(462114-462160)
chr8 (147-236)||(32822695-32822784)
chr8 (173-234)||(31200879-31200940)
[»] chr3 (12 HSPs)
chr3 (105-236)||(23774481-23774612)
chr3 (105-236)||(48634215-48634343)
chr3 (105-230)||(33112845-33112970)
chr3 (108-215)||(18429939-18430046)
chr3 (105-224)||(31887111-31887230)
chr3 (108-234)||(33852344-33852469)
chr3 (106-236)||(45898043-45898173)
chr3 (106-234)||(41020663-41020791)
chr3 (109-233)||(23888442-23888566)
chr3 (108-220)||(45256888-45256999)
chr3 (149-236)||(24382594-24382681)
chr3 (173-230)||(2977057-2977114)
[»] chr1 (12 HSPs)
chr1 (105-236)||(18183609-18183740)
chr1 (106-236)||(46638473-46638603)
chr1 (108-215)||(42134834-42134941)
chr1 (109-215)||(45380646-45380752)
chr1 (132-236)||(6575500-6575604)
chr1 (106-236)||(31801961-31802091)
chr1 (147-236)||(35479673-35479762)
chr1 (108-212)||(44158141-44158245)
chr1 (106-234)||(47269116-47269244)
chr1 (106-225)||(36895177-36895296)
chr1 (106-232)||(33682889-33683006)
chr1 (196-231)||(27940947-27940982)
[»] chr7 (11 HSPs)
chr7 (106-236)||(23954139-23954269)
chr7 (115-231)||(40784685-40784801)
chr7 (106-226)||(46996368-46996488)
chr7 (128-233)||(46812265-46812370)
chr7 (105-236)||(27955703-27955833)
chr7 (176-236)||(2167807-2167867)
chr7 (108-234)||(47341355-47341478)
chr7 (173-231)||(38613803-38613861)
chr7 (173-234)||(8423008-8423069)
chr7 (116-225)||(33038476-33038585)
chr7 (173-234)||(35344017-35344078)
[»] chr4 (10 HSPs)
chr4 (106-236)||(2827732-2827862)
chr4 (106-234)||(2350171-2350299)
chr4 (109-234)||(10372339-10372464)
chr4 (106-231)||(35996402-35996527)
chr4 (106-234)||(10762917-10763045)
chr4 (132-236)||(44558178-44558282)
chr4 (173-234)||(4519704-4519765)
chr4 (132-236)||(27625124-27625228)
chr4 (174-231)||(44794488-44794545)
chr4 (158-236)||(51041645-51041724)
[»] chr6 (4 HSPs)
chr6 (106-234)||(29077664-29077792)
chr6 (106-234)||(29112636-29112764)
chr6 (173-231)||(2968464-2968522)
chr6 (173-231)||(4641694-4641752)


Alignment Details
Target: chr5 (Bit Score: 287; Significance: 1e-160; HSPs: 13)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 287; E-Value: 1e-160
Query Start/End: Original strand, 277 - 628
Target Start/End: Complemental strand, 38061342 - 38060990
Alignment:
Q  277 aaaaaattgatggttcaagggtagttttctatcgttattatccacgtacgagtgccgaagctct--cttagagagaaggcgtcataagagtcttaaccac 374  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||  ||||||   |||||||||||||||||||||||||    
T  38061342 aaaaaattgatggttcaagggtagttttctatccttattatccacgtacgagtgccgaaactctggcttagattaaaggcgtcataagagtcttaaccac 38061243  T
Q  375 cctattgcagatgcgatagacataacccatagcagcttaccttaagccatgttccaacaattttatgccctcacttgagtaacaagctggcgttaatagc 474  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  38061242 cctattgcagatgtgatagacataacccatagcagcttaccttaagccgtgttccaacaattttatgccctcacttgagtaacaagctgtcgttaatagc 38061143  T
Q  475 tcggcgttgattcatgcttaatcttactttataaaggccccatatattttatattctggtctatgtgggacatttataaactcgctgtcgttattatttg 574  Q
    ||||||| ||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||    
T  38061142 tcggcgtcgattcatgcttaatcttactttataaagg-cccatatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttg 38061044  T
Q  575 tgattatatcacactatgatgacccaaatatgttgcagttcaagccataattct 628  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  38061043 tgattatatcacactatgatgacccaaatatgttgcagttgaagccataattct 38060990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 285; E-Value: 1e-159
Query Start/End: Original strand, 277 - 628
Target Start/End: Complemental strand, 38596791 - 38596440
Alignment:
Q  277 aaaaaattgatggttcaagggtagttttctatcgttattatccacgtacgagtgccgaagctctcttagagagaaggcgtcataagagtcttaaccaccc 376  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||   ||| |||||||||||||| ||||||||    
T  38596791 aaaaaattgatggttcaagggtagttttctatccttattatccacgtacgagtgccgaagctctcttagattaaagacgtcataagagtctaaaccaccc 38596692  T
Q  377 tattgcagatgcgatagacataacccatagcagctt-accttaagccatgttccaacaattttatgccctcacttgagtaacaagctggcgttaatagct 475  Q
    |||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38596691 tattgcagatgcaatagacataacccatagcagctttaccttaagccgtgttccaacaattttatgccctcacttgagtaacaagctggcgttaatagct 38596592  T
Q  476 cggcgttgattcatgcttaatcttactttataaaggccccatatattttatattctggtctatgtgggacatttataaactcgctgtcgttattatttgt 575  Q
    |||| |||||||||||||||||| ||||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||    
T  38596591 cggcattgattcatgcttaatctaactttataaagaccc-atatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttgt 38596493  T
Q  576 gattatatcacactatgatgacccaaatatgttgcagttcaagccataattct 628  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38596492 gattatatcacactatgatgacccaaatatgttgcagttcaagccataattct 38596440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 278 - 628
Target Start/End: Original strand, 38552024 - 38552373
Alignment:
Q  278 aaaaattgatggttcaagggtagttttctatcgttattatccacgtacgagtgccgaagctctcttagagagaaggcgtcataagagtcttaaccaccct 377  Q
    |||| ||||||||||||||||||||||||||| ||||||||||| ||| |||||| |||||||||||||    |||||||||||||||||||||||||||    
T  38552024 aaaatttgatggttcaagggtagttttctatccttattatccacttacaagtgccaaagctctcttagattataggcgtcataagagtcttaaccaccct 38552123  T
Q  378 attgcagatgcgatagacataacccatagcagcttaccttaagccatgttccaacaattttatgccctcacttgagtaacaagctggcgttaatagctcg 477  Q
    |||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  38552124 attgcagatgtgatagacataacccatagcagcttaccttaagccgtgttccaacaattttatgccctcacttgagtgacaagctggcgttaatagctcg 38552223  T
Q  478 gcgttgattcatgcttaatcttactttataaaggccccatatattttatattctggtctatgtgggacatttataaactcgctgtcgttattatttgtga 577  Q
    ||||||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||    
T  38552224 gcgttgatttatgcttaatctaactttataaagg-cccatatattttatgttctggtctatgtgggacatttataaactcgttgtcgttattatttgtga 38552322  T
Q  578 ttatatcacactatgatgacccaaatatgttgcagttcaagccataattct 628  Q
    ||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  38552323 ttatatcacactatgatgacctaaatatgttgcagttcaagccataattct 38552373  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 38177751 - 38177882
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| ||||| | ||||||||||||||| ||||||||||||||||    
T  38177751 gaggaaaggtgttacctttaaccacaaccgaacacaacaacttcaaaaacgtgagaatcatcgaagatgatgatggttttggagaggtgagaatggagaa 38177850  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| ||||||||||||||||||||||    
T  38177851 agttttagcaggaaggagaagagtcaaggacg 38177882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 38204975 - 38205106
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||| ||||| | ||||||||||||||| ||||||||||||||||    
T  38204975 gaggaaaggtgttacctttaaccacaaccgaacacaacaacttcaaaaacgtgagaatcatcgaagatgatgatggttttggagaggtgagaatggagaa 38205074  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| ||||||||||||||||||||||    
T  38205075 agttttagcaggaaggagaagagtcaaggacg 38205106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 35292046 - 35292175
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    |||||||||| |||||||||||||||||||||||||  ||| | |||||||| ||||||| || | | ||||||| ||||||| ||||||||||||||||    
T  35292046 gaggaaaggttttacctttaaccacagccgaacacagaaactttaaaaacgtgagaatcgccggagatgatgatgattttggagaggtgagaatggagaa 35292145  T
Q  205 agttttagcgggaaggagaagagtcaagga 234  Q
    |||||||| ||||||||||||  |||||||    
T  35292146 agttttagggggaaggagaaggatcaagga 35292175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 35395786 - 35395658
Alignment:
Q  108 gaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagt 207  Q
    |||||| ||||||||||| ||||||||||||||  ||| ||||||| || |||||||||| | | ||||||| |||||||  ||||| ||||||| ||||    
T  35395786 gaaaggcgttacctttaatcacagccgaacacacaaacttcaaaaatgtcagaatcgtcggagatgatgatgattttggaggggtgaaaatggaggaagt 35395687  T
Q  208 tttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||||||| ||||| ||||||||||    
T  35395686 tttagcgggaagaagaagggtcaaggacg 35395658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 58; E-Value: 4e-24
Query Start/End: Original strand, 105 - 234
Target Start/End: Original strand, 43317732 - 43317861
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    |||||||||||||||||||||||||| |||||||||  ||  ||||||||   ||||||| || | | ||||||| ||||||  ||||||||||||||||    
T  43317732 gaggaaaggtgttacctttaaccacaaccgaacacagaaatttcaaaaacaagagaatcgccggagatgatgatgattttggggaggtgagaatggagaa 43317831  T
Q  205 agttttagcgggaaggagaagagtcaagga 234  Q
    |||||||| ||| |||||||| ||||||||    
T  43317832 agttttaggggggaggagaagggtcaagga 43317861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 32838236 - 32838298
Alignment:
Q  174 atgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||    
T  32838236 atgatggttttggagaggtgagaatggagaaagttttagcgggaaggagaagagtcaatgacg 32838298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 105 - 178
Target Start/End: Original strand, 32837009 - 32837082
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgat 178  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| | |||||||||| | ||||||    
T  32837009 gaggaaaggtgttacctttaaccacagccgaacacaacaacttcaaaaacgtgaaaatcgtcgaagatgatgat 32837082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 18728268 - 18728398
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    ||||||||  |||||||||| ||||||||||||||  ||| ||||||| | |||||||| || | | ||||||| |||||||  ||||| ||||||| ||    
T  18728268 aggaaaggcattacctttaatcacagccgaacacacaaacttcaaaaatggtagaatcgccggagatgatgatgattttggaggggtgaaaatggaggaa 18728367  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| |||| ||||| ||||| ||||    
T  18728368 gttttagcgagaagaagaagggtcaaagacg 18728398  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 32087972 - 32087842
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||||| ||||||||||||||  ||| ||||||| | || |||||  | | | ||||||| |||||||  ||||  ||||||| ||    
T  32087972 aggaaaggtgttacctttaatcacagccgaacacacaaacttcaaaaatggtataatcgctggagatgatgatgattttggaggggtggaaatggaggaa 32087873  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| |||| ||||| ||||||||||    
T  32087872 gttttagcgagaagaagaagggtcaaggacg 32087842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 106 - 233
Target Start/End: Complemental strand, 33256857 - 33256730
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||| ||||||||||| |||| |||||||||  ||| ||||||| || | ||||| || | | ||||||| |||||||  ||||| ||||||| ||    
T  33256857 aggaaaggcgttacctttaatcacaaccgaacacacaaacttcaaaaatgtcaaaatcgccggagatgatgatgattttggaggggtgaaaatggaggaa 33256758  T
Q  206 gttttagcgggaaggagaagagtcaagg 233  Q
    ||||||| | |||| ||||| |||||||    
T  33256757 gttttagtgagaagaagaagtgtcaagg 33256730  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 108; Significance: 7e-54; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 108; E-Value: 7e-54
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 37417743 - 37417612
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | ||||||||||||||| |||||||||||||||     
T  37417743 gaggaaaggtgttacctttaaccacagccgaacacaacaacttcaaaaacgtgagaatcgtcgaagatgatgatggttttggagaggtgagaatggagac 37417644  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||||||||||||||||||||||||||    
T  37417643 agttttagcgggaaggagaagagtcaaggacg 37417612  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 42879781 - 42879650
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    |||||||||||||||||||||||||| |||||||||||||| |||||||||| |||||||| ||| | ||||||||||||||| ||||||||||||||||    
T  42879781 gaggaaaggtgttacctttaaccacaaccgaacacaacaacttcaaaaacgtgagaatcgttgaagatgatgatggttttggagaggtgagaatggagaa 42879682  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||||  ||| |||||||||||||||||    
T  42879681 agttttagcaagaaagagaagagtcaaggacg 42879650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 109 - 236
Target Start/End: Original strand, 92016 - 92143
Alignment:
Q  109 aaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagtt 208  Q
    ||||||||||||||||| ||||||||||||||  ||| ||||||| || |||||||||| | | ||||||| |||||||  ||||| ||||||| ||||     
T  92016 aaaggtgttacctttaatcacagccgaacacacaaacttcaaaaatgtcagaatcgtcggagatgatgatgattttggaggggtgaaaatggaggaagta 92115  T
Q  209 ttagcgggaaggagaagagtcaaggacg 236  Q
    |||||| |||| ||||| ||||||||||    
T  92116 ttagcgagaagaagaagggtcaaggacg 92143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 106 - 225
Target Start/End: Complemental strand, 42002072 - 42001954
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||||| ||||||||||||||  ||| |||||||||| | ||||| || | | |||||| ||||||||  ||||| ||||| ||||    
T  42002072 aggaaaggtgttacctttaatcacagccgaacacagaaacttcaaaaacgtaataatcgccggagatgatgat-gttttggaggggtgataatggggaaa 42001974  T
Q  206 gttttagcgggaaggagaag 225  Q
    ||||||||||||||||||||    
T  42001973 gttttagcgggaaggagaag 42001954  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 39064 - 39194
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||||| ||||||||||||||  ||| |||||||  | |||||||||| | | ||||||| |||||||  ||||| ||||||| ||    
T  39064 aggaaaggtgttacctttaatcacagccgaacacacaaacttcaaaaatttcagaatcgtcggacatgatgatgattttggaggggtgaaaatggaggaa 39163  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    || |||||| |||| ||||| ||||||||||    
T  39164 gtattagcgagaagaagaagggtcaaggacg 39194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 39920 - 39859
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaagga 234  Q
    ||||||| |||||||  |||||||||||||||||||||||||||||||||||||||||||||    
T  39920 gatgatgattttggaggggtgagaatggagaaagttttagcgggaaggagaagagtcaagga 39859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 29909328 - 29909458
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||  ||||||||||| ||||| ||||||||  ||| |||||||||| ||||||  || | | ||||||  |||||||  ||||| ||||||| ||    
T  29909328 aggaaagacgttacctttaatcacagtcgaacacacaaacttcaaaaacgtcagaatcaccggagatgatgataattttggaggggtgaaaatggaggaa 29909427  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||||||||| ||||| ||||||||||    
T  29909428 gttttagcgggaagaagaagggtcaaggacg 29909458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 116 - 222
Target Start/End: Complemental strand, 15432779 - 15432673
Alignment:
Q  116 ttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgg 215  Q
    ||||||||||  |||||||||||||  ||| |||||||||| ||||||| ||   | ||||||| |||||||  ||||||||||| |||||||| |||||    
T  15432779 ttacctttaattacagccgaacacagaaacttcaaaaacgtcagaatcgccggtgatgatgatgattttggaggggtgagaatggtgaaagtttgagcgg 15432680  T
Q  216 gaaggag 222  Q
    |||||||    
T  15432679 gaaggag 15432673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 41706927 - 41706866
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaagga 234  Q
    ||||||| |||||||  ||||| ||||||||| |||||||||||||||||||||||||||||    
T  41706927 gatgatgattttggaggggtgacaatggagaacgttttagcgggaaggagaagagtcaagga 41706866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 15372896 - 15372838
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    ||||||| |||||||  | ||| ||||||||| ||||||||||||||||||||||||||    
T  15372896 gatgatgattttggagggttgacaatggagaacgttttagcgggaaggagaagagtcaa 15372838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 190 - 236
Target Start/End: Complemental strand, 25620043 - 25619997
Alignment:
Q  190 ggtgagaatggagaaagttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||||||||||||||||| ||  ||||||||| ||||||||||    
T  25620043 ggtgagaatggagaaagttttatcgaaaaggagaagggtcaaggacg 25619997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 104; Significance: 2e-51; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 105 - 232
Target Start/End: Original strand, 42897432 - 42897559
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||| | |||||||||||||||  |||||||||||||||    
T  42897432 gaggaaaggtgttacctttaaccacagccgaacacaacaacttcaaaaacgtgagaatcgtcgaagatgatgatggttttggagtggtgagaatggagaa 42897531  T
Q  205 agttttagcgggaaggagaagagtcaag 232  Q
    ||||||||||||||||||||||||||||    
T  42897532 agttttagcgggaaggagaagagtcaag 42897559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 106 - 233
Target Start/End: Original strand, 37525687 - 37525814
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||| |||||||||||||||||| |||||||||| ||| ||| | |||| ||||||| |  | | ||||||| |||||||  |||||||||| |||||    
T  37525687 aggaaatgtgttacctttaaccacaaccgaacacaaaaacttcacagacgtgagaatcgccagagatgatgatgattttggaggggtgagaatgaagaaa 37525786  T
Q  206 gttttagcgggaaggagaagagtcaagg 233  Q
    ||||||||||||||||||||||||||||    
T  37525787 gttttagcgggaaggagaagagtcaagg 37525814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 231
Target Start/End: Complemental strand, 8654958 - 8654836
Alignment:
Q  108 gaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagt 207  Q
    |||||| ||||||||| | ||||| ||||||||  ||| ||||||| || ||||| | || | | ||||||| |||||||  ||||||||||||||||||    
T  8654958 gaaaggcgttacctttgatcacagtcgaacacaggaacttcaaaaatgtcagaattg-cggagatgatgatgattttggaggggtgagaatggagaaagt 8654860  T
Q  208 tttagcgggaaggagaagagtcaa 231  Q
    ||||||||||||||||||||||||    
T  8654859 tttagcgggaaggagaagagtcaa 8654836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 33750050 - 33750180
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||||| || ||| |||||||  ||| ||||||| || |||||| ||| | | ||||||| |||||||  ||||| |||| || ||    
T  33750050 aggaaaggtgttacctttaatcagagcagaacacacaaacttcaaaaatgtcagaatcatcggagatgatgatgattttggaggggtgaaaatgaaggaa 33750149  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| |||| | ||| ||||||||||    
T  33750150 gttttagcgagaagaaaaagggtcaaggacg 33750180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 116 - 235
Target Start/End: Complemental strand, 31821856 - 31821737
Alignment:
Q  116 ttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgg 215  Q
    |||||||||| |||| |||||||||  ||| ||||||| || ||||||| || | | ||||||| |||||||  ||||| ||||||| |||||||||||     
T  31821856 ttacctttaatcacaaccgaacacacaaacttcaaaaatgtcagaatcgccggagatgatgatgattttggaggggtgaaaatggaggaagttttagcga 31821757  T
Q  216 gaaggagaagagtcaaggac 235  Q
     ||| ||||| |||||||||    
T  31821756 taagaagaagggtcaaggac 31821737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 190 - 236
Target Start/End: Original strand, 462114 - 462160
Alignment:
Q  190 ggtgagaatggagaaagttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||||||||||||||||||||||||||||||| ||||| ||||    
T  462114 ggtgagaatggagaaagttttagcgggaaggagaagggtcaatgacg 462160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 147 - 236
Target Start/End: Complemental strand, 32822784 - 32822695
Alignment:
Q  147 tcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||||| |||||||||| | | ||||||| ||||| | ||| ||||||| | |||||||||| |||||||||||| ||||| ||||    
T  32822784 tcaaaaacgtcagaatcgtcggagatgatgatgattttgaagaggcgagaatgaataaagttttagtgggaaggagaagggtcaatgacg 32822695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 31200879 - 31200940
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaagga 234  Q
    ||||||| |||||||  ||||| ||||||||| ||||||||||||| ||||| |||||||||    
T  31200879 gatgatgattttggaggggtgacaatggagaacgttttagcgggaaagagaaaagtcaagga 31200940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 100; Significance: 4e-49; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 23774612 - 23774481
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    ||||||| ||||||||||||||||||||||||||||||||| |||| ||| | |||||||||||| | ||||||||||||||| ||||||||||||||||    
T  23774612 gaggaaatgtgttacctttaaccacagccgaacacaacaacttcaagaacatgagaatcgtcgaagatgatgatggttttggagaggtgagaatggagaa 23774513  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||||||||||||||||||||||||||    
T  23774512 agttttagcgggaaggagaagagtcaaggacg 23774481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 48634343 - 48634215
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||  ||||||||| |   ||||||||||||||| ||||||||||||||||    
T  48634343 gaggaaaggtgttacctttaaccacagccgaacacaacaacttcaaaaacgtgcgaatcgtcgga---gatgatggttttggagaggtgagaatggagaa 48634247  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||||||||||||||||||||||||||    
T  48634246 agttttagcgggaaggagaagagtcaaggacg 48634215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 105 - 230
Target Start/End: Original strand, 33112845 - 33112970
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    ||||||||||||||||||||||||||| ||||||||  ||| |||||||||| |||||||  | | | ||||||| ||||||| ||||||||||||||||    
T  33112845 gaggaaaggtgttacctttaaccacagtcgaacacagaaacttcaaaaacgtgagaatcgctggagatgatgatgattttggagaggtgagaatggagaa 33112944  T
Q  205 agttttagcgggaaggagaagagtca 230  Q
    |||||||||||||| |||||| ||||    
T  33112945 agttttagcgggaatgagaagggtca 33112970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 215
Target Start/End: Original strand, 18429939 - 18430046
Alignment:
Q  108 gaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagt 207  Q
    |||||||||||||||||| ||||||||||||||  ||| |||||||||| | ||||| ||   | ||||||| |||||||  ||||||||||||||||||    
T  18429939 gaaaggtgttacctttaatcacagccgaacacagaaacttcaaaaacgtcaaaatcgccggtgatgatgatgattttggaggggtgagaatggagaaagt 18430038  T
Q  208 tttagcgg 215  Q
    ||||||||    
T  18430039 tttagcgg 18430046  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 31887111 - 31887230
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    |||||||||||||||||||| |||||||||||||||  ||| |||||| ||  ||||||| || | | || |||| ||||  | ||||| ||||||||||    
T  31887111 gaggaaaggtgttacctttagccacagccgaacacagaaacttcaaaaccgcgagaatcgccggagatgacgatgattttatagaggtgggaatggagaa 31887210  T
Q  205 agttttagcgggaaggagaa 224  Q
    ||||||||||||||||||||    
T  31887211 agttttagcgggaaggagaa 31887230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 33852344 - 33852469
Alignment:
Q  108 gaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagt 207  Q
    |||||| ||||||||||| ||||||| ||||||  ||| |||||||||| ||||||| ||   | ||||||| |||||||  ||||||||||||||||||    
T  33852344 gaaaggcgttacctttaatcacagcc-aacacagaaacttcaaaaacgtcagaatcgccggtgatgatgatgattttggaggggtgagaatggagaaagt 33852442  T
Q  208 tttagcgggaaggagaagagtcaagga 234  Q
    |||||||| |||| ||| |||||||||    
T  33852443 tttagcggaaaggtgaaaagtcaagga 33852469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 45898043 - 45898173
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||| ||||||||||||| |||| |||||||||  ||| ||||||| || ||||||| || | | ||||||| |||||||  ||||| ||||||| ||    
T  45898043 aggaaatgtgttacctttaatcacaaccgaacacacaaacttcaaaaatgtcagaatcgccggagatgatgatgtttttggaggggtgaaaatggaggaa 45898142  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| |||| ||||| ||||||||||    
T  45898143 gttttagcgagaagaagaagggtcaaggacg 45898173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 41020663 - 41020791
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||| | ||| | ||||||||  ||| ||||| |||  |||||||  | | | ||||||| |||||||  ||||| |||||||||     
T  41020663 aggaaaggtgttacctttgatcacggtcgaacacaggaacttcaaacacgccagaatcgatggagatgatgatgattttggaggggtgacaatggagaac 41020762  T
Q  206 gttttagcgggaaggagaagagtcaagga 234  Q
    |||||||||||||||||||||||||||||    
T  41020763 gttttagcgggaaggagaagagtcaagga 41020791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 109 - 233
Target Start/End: Original strand, 23888442 - 23888566
Alignment:
Q  109 aaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagtt 208  Q
    ||||| ||||||||||| |||| |||||||||  ||| | ||||| || |||||||||| | | ||||||| |||||||  ||||| ||||||| |||||    
T  23888442 aaaggcgttacctttaatcacaaccgaacacacaaacttaaaaaatgtcagaatcgtcggagatgatgatgattttggaggggtgaaaatggaggaagtt 23888541  T
Q  209 ttagcgggaaggagaagagtcaagg 233  Q
    |||||| |||| ||||| |||||||    
T  23888542 ttagcgagaagaagaagggtcaagg 23888566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 108 - 220
Target Start/End: Original strand, 45256888 - 45256999
Alignment:
Q  108 gaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagt 207  Q
    |||||| ||||||||||| |||||||||||| |  ||| |||||||||| ||||||| |    || |||||| |||||||  ||||||||||||||||||    
T  45256888 gaaaggcgttacctttaatcacagccgaacatagaaacttcaaaaacgtcagaatcgccagtgag-atgatgattttggaggggtgagaatggagaaagt 45256986  T
Q  208 tttagcgggaagg 220  Q
    |||||||| ||||    
T  45256987 tttagcggaaagg 45256999  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 149 - 236
Target Start/End: Original strand, 24382594 - 24382681
Alignment:
Q  149 aaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||| |||||||||| | | ||||||| ||||| |  ||||| ||||||||| |||||||||||||||||||||| ||| ||||    
T  24382594 aaaaacgtgagaatcgtcggagatgatgatgattttgaaggggtgaaaatggagaatgttttagcgggaaggagaagagacaatgacg 24382681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 173 - 230
Target Start/End: Original strand, 2977057 - 2977114
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtca 230  Q
    ||||||| ||||||| |||||||||||||||| ||||| |||||||| ||||| ||||    
T  2977057 gatgatgattttggagaggtgagaatggagaaggtttttgcgggaagaagaagggtca 2977114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 84; Significance: 1e-39; HSPs: 12)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 18183609 - 18183740
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    ||||||||||||||||||||||||||||||||||||  ||| |||||||||| ||||||| || | | ||||||| ||||||| ||||||||||||||||    
T  18183609 gaggaaaggtgttacctttaaccacagccgaacacagaaacttcaaaaacgtgagaatcgccggagatgatgatgattttggagaggtgagaatggagaa 18183708  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||||||||||||||| ||||| ||||    
T  18183709 agttttagcgggaaggagaagggtcaatgacg 18183740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 46638473 - 46638603
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||| ||||||||||||| ||||||||||||||  ||| ||||||| || |||||||||||| | ||||||| |||||||  ||||| ||||||| ||    
T  46638473 aggaaatgtgttacctttaatcacagccgaacacacaaacttcaaaaatgtcagaatcgtcgaagatgatgatgattttggaggggtgaaaatggaggaa 46638572  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||||  ||| ||||| ||||| ||||    
T  46638573 gttttagcgaaaagaagaagggtcaaagacg 46638603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 215
Target Start/End: Complemental strand, 42134941 - 42134834
Alignment:
Q  108 gaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagt 207  Q
    |||||||||||||||||| |||| |||||||||  ||| |||||||||| ||||||| |||  |  |||||| |||||||  ||||||||||||||||||    
T  42134941 gaaaggtgttacctttaatcacatccgaacacataaacttcaaaaacgtcagaatcgccgatgattatgatgattttggaggggtgagaatggagaaagt 42134842  T
Q  208 tttagcgg 215  Q
    ||||||||    
T  42134841 tttagcgg 42134834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 109 - 215
Target Start/End: Original strand, 45380646 - 45380752
Alignment:
Q  109 aaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagtt 208  Q
    ||||| ||||||||||| ||||||||||||||  ||| |||||||||| ||||||| ||   | ||||||| |||||||  |||||||||||||||||||    
T  45380646 aaaggcgttacctttaatcacagccgaacacataaacttcaaaaacgtcagaatcgccggtgatgatgatgattttggaggggtgagaatggagaaagtt 45380745  T
Q  209 ttagcgg 215  Q
    |||||||    
T  45380746 ttagcgg 45380752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 6575604 - 6575500
Alignment:
Q  132 ccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    |||||||||  ||| |||||||||| |||||| ||| | | ||||||| |||||||  |||||||||||| |||||||||| |||||||||||| |||||    
T  6575604 ccgaacacataaacttcaaaaacgtcagaatcatcggagatgatgatgattttggaggggtgagaatggataaagttttagtgggaaggagaagggtcaa 6575505  T
Q  232 ggacg 236  Q
    |||||    
T  6575504 ggacg 6575500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 31802091 - 31801961
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||||| ||||||||||||||  ||| ||||||| || ||||||| || | | ||||||| |||||||   |||| | ||||| ||    
T  31802091 aggaaaggtgttacctttaatcacagccgaacacacaaacttcaaaaatgtcagaatcgccggagatgatgatgattttggaggagtgaaagtggaggaa 31801992  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| |||| ||||| ||||| ||||    
T  31801991 gttttagcgagaagaagaagggtcaatgacg 31801961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 147 - 236
Target Start/End: Original strand, 35479673 - 35479762
Alignment:
Q  147 tcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaaggacg 236  Q
    |||||||| | |||||||||||| | ||||||| ||||||| ||| ||||||| | |||||||||| |||||||||||| ||||||||||    
T  35479673 tcaaaaacatcagaatcgtcgaagatgatgatgattttggagaggcgagaatgaataaagttttagtgggaaggagaagggtcaaggacg 35479762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 108 - 212
Target Start/End: Complemental strand, 44158245 - 44158141
Alignment:
Q  108 gaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagt 207  Q
    |||||| ||||||||||| ||||||||||||||  ||| ||||||| || ||||||| ||   | ||||||| ||||| || ||||||||||||||||||    
T  44158245 gaaaggcgttacctttaatcacagccgaacacataaacttcaaaaaagtcagaatcgccggtgatgatgatgattttgaaagggtgagaatggagaaagt 44158146  T
Q  208 tttag 212  Q
    |||||    
T  44158145 tttag 44158141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 47269116 - 47269244
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||| | ||| | ||||||||  ||| ||||| |||  |||||||  | | | || |||| |||||||  ||||| |||||||||     
T  47269116 aggaaaggtgttacctttgatcacggtcgaacacaggaacttcaaacacgccagaatcgatggagatgaggatgattttggaggggtgaaaatggagaac 47269215  T
Q  206 gttttagcgggaaggagaagagtcaagga 234  Q
    |||||||||||||||||||||||||||||    
T  47269216 gttttagcgggaaggagaagagtcaagga 47269244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 225
Target Start/End: Original strand, 36895177 - 36895296
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||| ||||||||| |||||||||||| |  ||| ||||||  || |||||||||| | | ||||||| |||||||  | ||| |||||||  |    
T  36895177 aggaaaggtgctacctttaatcacagccgaacaaacaaacttcaaaactgtcagaatcgtcggagatgatgatgattttggagggatgaaaatggaggta 36895276  T
Q  206 gttttagcgggaaggagaag 225  Q
    ||||||||| |||| |||||    
T  36895277 gttttagcgagaagaagaag 36895296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 106 - 232
Target Start/End: Original strand, 33682889 - 33683006
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||| ||||||||||| ||||| ||||||||  ||| |||||||||| | ||||| || | | ||||||| |||||  ||||       |||||||    
T  33682889 aggaaaggcgttacctttaatcacagtcgaacacagaaacttcaaaaacgtcataatcgccggagatgatgatgattttg--aagg-------ggagaaa 33682979  T
Q  206 gttttagcgggaaggagaagagtcaag 232  Q
    |||||||||||||||||||| ||||||    
T  33682980 gttttagcgggaaggagaagggtcaag 33683006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 196 - 231
Target Start/End: Complemental strand, 27940982 - 27940947
Alignment:
Q  196 aatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    ||||||||| ||||||||||||||||||||||||||    
T  27940982 aatggagaacgttttagcgggaaggagaagagtcaa 27940947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 68; Significance: 5e-30; HSPs: 11)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 23954269 - 23954139
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaa-aggatgatggttttggaaaggtgagaatggagaa 204  Q
    |||||||||| ||||||||||||||||||||| ||  ||| |||||||||| ||||||| ||| | | ||||||| ||||||| ||||||||||||||||    
T  23954269 aggaaaggtgctacctttaaccacagccgaactcagaaacttcaaaaacgtgagaatcg-cgagagatgatgatgattttggagaggtgagaatggagaa 23954171  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| || |||||||||||||||||||    
T  23954170 agttttagcaggtaggagaagagtcaaggacg 23954139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 61; E-Value: 7e-26
Query Start/End: Original strand, 115 - 231
Target Start/End: Complemental strand, 40784801 - 40784685
Alignment:
Q  115 gttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcg 214  Q
    |||||||||||||||| |||||||||| ||| ||||| |||| ||||||| | || | | ||||| |||||||  |||||||||||||||||||||||||    
T  40784801 gttacctttaaccacaaccgaacacaaaaacttcaaacacgtgagaatcgccaaagatggtgatgattttggaggggtgagaatggagaaagttttagcg 40784702  T
Q  215 ggaaggagaagagtcaa 231  Q
    ||||||||||| |||||    
T  40784701 ggaaggagaagggtcaa 40784685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 106 - 226
Target Start/End: Original strand, 46996368 - 46996488
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||||| ||||||||||||||  ||| ||||||| || |||||||||| | | ||||||| |||||||  ||||| ||||||| ||    
T  46996368 aggaaaggtgttacctttaatcacagccgaacacacaaacttcaaaaatgtcagaatcgtcggagatgatgatgattttggaggggtgaaaatggaggaa 46996467  T
Q  206 gttttagcgggaaggagaaga 226  Q
    ||||||||| |||| ||||||    
T  46996468 gttttagcgagaagaagaaga 46996488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 46812265 - 46812370
Alignment:
Q  128 acagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagag 227  Q
    |||||||||||||  ||| |||||||||| |||||||||| | | ||||||| |||||||  ||||||||||||||||||||||| |||||||||||  |    
T  46812265 acagccgaacacagaaacttcaaaaacgtcagaatcgtcggagatgatgatgattttggaggggtgagaatggagaaagttttagtgggaaggagaaagg 46812364  T
Q  228 tcaagg 233  Q
    ||||||    
T  46812365 tcaagg 46812370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 105 - 236
Target Start/End: Complemental strand, 27955833 - 27955703
Alignment:
Q  105 gaggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaa 204  Q
    ||||||| ||||||||||| ||||||| ||||||||||||| | |||||    || ||||||| | | ||||||| ||||||| |||||||||||| |||    
T  27955833 gaggaaatgtgttaccttttaccacagacgaacacaacaacttaaaaaattagaggatcgtcggagatgatgatgattttggagaggtgagaatgg-gaa 27955735  T
Q  205 agttttagcgggaaggagaagagtcaaggacg 236  Q
     |||| ||||||||| ||||| ||||||||||    
T  27955734 ggtttaagcgggaagcagaagggtcaaggacg 27955703  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 176 - 236
Target Start/End: Complemental strand, 2167867 - 2167807
Alignment:
Q  176 gatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaaggacg 236  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  2167867 gatgattttggagaggtgagaatggagaaagttttagcgggaaggagaagggtcaaagacg 2167807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 108 - 234
Target Start/End: Original strand, 47341355 - 47341478
Alignment:
Q  108 gaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagt 207  Q
    |||||| ||||||||||| ||||||||||||||  ||| |||||||| | ||||||||||     ||||||| |||||||  |||||||||| |||||||    
T  47341355 gaaaggcgttacctttaatcacagccgaacacagaaacgtcaaaaacttcagaatcgtcg---gtgatgatgattttggaggggtgagaatgaagaaagt 47341451  T
Q  208 tttagcgggaaggagaagagtcaagga 234  Q
    |||||||| |||| |||  ||||||||    
T  47341452 tttagcggaaaggtgaaatgtcaagga 47341478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 38613861 - 38613803
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    ||||||| ||||||| |||||||||| |||||||||||||||||||||||||| |||||    
T  38613861 gatgatgattttggagaggtgagaatagagaaagttttagcgggaaggagaagggtcaa 38613803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 8423008 - 8423069
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaagga 234  Q
    ||||||| |||||||  | ||| ||||||||| |||||||||||||||||||||||||||||    
T  8423008 gatgatgattttggagggatgacaatggagaacgttttagcgggaaggagaagagtcaagga 8423069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 225
Target Start/End: Original strand, 33038476 - 33038585
Alignment:
Q  116 ttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgg 215  Q
    |||||||||| |||||  |||| ||  ||| |||||||| | ||||||| || | | ||||||| |||||||  |||| |||||||||||||||||||||    
T  33038476 ttacctttaatcacagttgaacgcataaacttcaaaaacatgagaatcgccggagatgatgatgattttggaggggtgggaatggagaaagttttagcgg 33038575  T
Q  216 gaaggagaag 225  Q
    ||||| ||||    
T  33038576 gaaggggaag 33038585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 173 - 234
Target Start/End: Original strand, 35344017 - 35344078
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaagga 234  Q
    ||||||| |||||||  ||||| ||||||||| ||||||||||||||||||||||| |||||    
T  35344017 gatgatgattttggaggggtgacaatggagaacgttttagcgggaaggagaagagttaagga 35344078  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 55; Significance: 3e-22; HSPs: 10)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 106 - 236
Target Start/End: Complemental strand, 2827862 - 2827732
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||||| |||| |||||||||  ||| ||||||| || ||||||| || | | ||||||| |||||||  ||||| ||||||| ||    
T  2827862 aggaaaggtgttacctttaatcacaaccgaacacacaaacttcaaaaatgtcagaatcgccggagatgatgatgattttggaggggtgaaaatggaggaa 2827763  T
Q  206 gttttagcgggaaggagaagagtcaaggacg 236  Q
    ||||||||| |||| ||||| ||||||||||    
T  2827762 gttttagcgagaagaagaagggtcaaggacg 2827732  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 106 - 234
Target Start/End: Original strand, 2350171 - 2350299
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||| | ||||||||| | |||||  |||||||  ||| |||||||||| ||||||| || | | ||| ||| |||||||  ||||||||||||||||    
T  2350171 aggaaatgcgttacctttgatcacagttgaacacaggaacttcaaaaacgtcagaatcgccggagatgattatgattttggaggggtgagaatggagaaa 2350270  T
Q  206 gttttagcgggaaggagaagagtcaagga 234  Q
    ||||||| |||||||||||||||||||||    
T  2350271 gttttagtgggaaggagaagagtcaagga 2350299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 109 - 234
Target Start/End: Original strand, 10372339 - 10372464
Alignment:
Q  109 aaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagtt 208  Q
    ||||||||||||||| | ||||| ||||||||  ||| ||||||| |  |||||||  | | | ||||||| |||||||  ||||| ||||||||| |||    
T  10372339 aaaggtgttacctttgatcacagtcgaacacaggaacttcaaaaatgccagaatcgatggagatgatgatgattttggaggggtgacaatggagaatgtt 10372438  T
Q  209 ttagcgggaaggagaagagtcaagga 234  Q
    ||||||||||||||||||||||||||    
T  10372439 ttagcgggaaggagaagagtcaagga 10372464  T

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Target: chr4; HSP #4
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 35996527 - 35996402
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    ||||||||  |||||||| | ||||  |||||||   ||| |||||||||| ||||||| || | | ||||||| |||||||  ||||||| ||||||||    
T  35996527 aggaaaggcattacctttgatcacaatcgaacacgggaacttcaaaaacgtcagaatcggcggagatgatgatgattttggaggggtgagactggagaaa 35996428  T
Q  206 gttttagcgggaaggagaagagtcaa 231  Q
    ||||||||||||||||||||||||||    
T  35996427 gttttagcgggaaggagaagagtcaa 35996402  T

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Target: chr4; HSP #5
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 10763045 - 10762917
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||| | ||| | ||||||||  ||| ||||| |||  |||||||  | | | ||||||| |||||||  ||||| |||||||||     
T  10763045 aggaaaggtgttacctttgatcacggtcgaacacaggaacttcaaacacgccagaatcgatggagatgatgatgattttggaggggtgacaatggagaac 10762946  T
Q  206 gttttagcgggaaggagaagagtcaagga 234  Q
    |||||||||||||||||||||||||||||    
T  10762945 gttttagcgggaaggagaagagtcaagga 10762917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 132 - 236
Target Start/End: Original strand, 44558178 - 44558282
Alignment:
Q  132 ccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    |||||||||  ||| |||||||||| |||||| ||||| | ||||||| |||||||  |||||||||||| | |||||||| |||||||||||| |||||    
T  44558178 ccgaacacagaaacttcaaaaacgtcagaatcatcgaagatgatgatgattttggaggggtgagaatggatagagttttagtgggaaggagaagggtcaa 44558277  T
Q  232 ggacg 236  Q
    |||||    
T  44558278 ggacg 44558282  T

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Target: chr4; HSP #7
Raw Score: 46; E-Value: 6e-17
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 4519765 - 4519704
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaagga 234  Q
    ||||||| ||||||| ||||||||||||||||||||||||||||||| ||||| ||||||||    
T  4519765 gatgatgattttggagaggtgagaatggagaaagttttagcgggaagaagaagggtcaagga 4519704  T

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Target: chr4; HSP #8
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 132 - 236
Target Start/End: Complemental strand, 27625228 - 27625124
Alignment:
Q  132 ccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    |||||||||  ||| |||||||||| |||||| ||| | | ||||||| |||||||  |||||||||||| |||||||||| |||||||||||| |||||    
T  27625228 ccgaacacagaaacttcaaaaacgtcagaatcatcggagatgatgatgattttggaggggtgagaatggataaagttttagtgggaaggagaagggtcaa 27625129  T
Q  232 ggacg 236  Q
     ||||    
T  27625128 tgacg 27625124  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 174 - 231
Target Start/End: Original strand, 44794488 - 44794545
Alignment:
Q  174 atgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    |||||| |||||||  ||||| ||||||||| ||||||||||||||||||||||||||    
T  44794488 atgatgattttggaggggtgacaatggagaacgttttagcgggaaggagaagagtcaa 44794545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 158 - 236
Target Start/End: Original strand, 51041645 - 51041724
Alignment:
Q  158 agaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaagttttagc-gggaaggagaagagtcaaggacg 236  Q
    |||||||||| | | ||||||| |||||||  ||||||||||||||||| |||||| |||||||||||| ||||| ||||    
T  51041645 agaatcgtcggagatgatgatgattttggaggggtgagaatggagaaagctttagcggggaaggagaagggtcaatgacg 51041724  T

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Target: chr6 (Bit Score: 49; Significance: 1e-18; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 29077792 - 29077664
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||| | ||| | ||||||||  ||| ||||| |||  |||||||  | | | ||||||| |||||||  ||||| |||||||||     
T  29077792 aggaaaggtgttacctttgatcacggtcgaacacaggaacttcaaacacgccagaatcgatggagatgatgatgattttggaggggtgaaaatggagaac 29077693  T
Q  206 gttttagcgggaaggagaagagtcaagga 234  Q
    |||||||||||||||||||||||||||||    
T  29077692 gttttagcgggaaggagaagagtcaagga 29077664  T

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Target: chr6; HSP #2
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 234
Target Start/End: Complemental strand, 29112764 - 29112636
Alignment:
Q  106 aggaaaggtgttacctttaaccacagccgaacacaacaacatcaaaaacgttagaatcgtcgaaaaggatgatggttttggaaaggtgagaatggagaaa 205  Q
    |||||||||||||||||| | ||| | ||||||||  ||| ||||| |||  |||||||  | | | ||||||| |||||||  ||||| |||||||||     
T  29112764 aggaaaggtgttacctttgatcacggtcgaacacaggaacttcaaacacgccagaatcgatggagatgatgatgattttggaggggtgacaatggagaac 29112665  T
Q  206 gttttagcgggaaggagaagagtcaagga 234  Q
    |||||||||||||||||||||||||||||    
T  29112664 gttttagcgggaaggagaagagtcaagga 29112636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 2968522 - 2968464
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    ||||||| |||||||  ||||| ||||||||| ||||||||||||||||||||||||||    
T  2968522 gatgatgattttggaggggtgacaatggagaacgttttagcgggaaggagaagagtcaa 2968464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 173 - 231
Target Start/End: Complemental strand, 4641752 - 4641694
Alignment:
Q  173 gatgatggttttggaaaggtgagaatggagaaagttttagcgggaaggagaagagtcaa 231  Q
    ||||||| |||||||  || || ||||||||| ||||||||||||||||||||||||||    
T  4641752 gatgatgattttggaggggcgacaatggagaacgttttagcgggaaggagaagagtcaa 4641694  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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