View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20248_high_24 (Length: 236)
Name: NF20248_high_24
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_high_24 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 1 - 217
Target Start/End: Complemental strand, 5480582 - 5480369
Alignment:
| Q |
1 |
aatttgacagaaaatgccttttatgcacataatatataatatagctttcagcagcctaactcacattgaaaattgtcccatggttgcaagtggaacagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5480582 |
aatttgacagaaaatgccttttatgcacataatatata-----gctttcagcagcctaactcacattgaaaattgtcccatggttgcaagtggaacagct |
5480488 |
T |
|
| Q |
101 |
gcatctgaactcgcatagctggtcatactaac--tggcctctctttataatgcttcggtttcagttacttcttgcgcttcaacgacattgtgaatttcgc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5480487 |
gcatctgaactcgcatagctggtcatactaactgtggcctctctttataatgctttggtttcagttacttcttgcgcttcaacgacattgtgaatttcgc |
5480388 |
T |
|
| Q |
199 |
cataatcagctccaaggca |
217 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
5480387 |
cataatcagctccaaggca |
5480369 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 45006155 - 45006368
Alignment:
| Q |
1 |
aatttgacagaaaatgccttttatgcacataatatataatatagctttcagcagcctaactcacattgaaaattgtcccatggttgcaagtggaacagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
45006155 |
aatttgacagaaaatgccttttatgcacataatatat-----agctttcagccgcctaactcacattgaaaattgtcccatggttgcaagtggaacagct |
45006249 |
T |
|
| Q |
101 |
gcatctgaactcgcatagctggtcatactaac--tggcctctctttataatgcttcggtttcagttacttcttgcgcttcaacgacattgtgaatttcgc |
198 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
45006250 |
gcatctgaactcgcatagctggtcatactaactgtggcctctctttataatgctttggtttcagttacttcttgcgcttcaacgacattgtgaattttgc |
45006349 |
T |
|
| Q |
199 |
cataatcagctccaaggca |
217 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
45006350 |
cataatcagctccaaggca |
45006368 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 172; Significance: 1e-92; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 172; E-Value: 1e-92
Query Start/End: Original strand, 1 - 217
Target Start/End: Original strand, 2682729 - 2682942
Alignment:
| Q |
1 |
aatttgacagaaaatgccttttatgcacataatatataatatagctttcagcagcctaactcacattgaaaattgtcccatggttgcaagtggaacagct |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2682729 |
aatttgacagaaaatgccttttatgcacataatatat-----agctttcagctgcctaactcacattgaaaattgtcccatggttgcaagtggaacagct |
2682823 |
T |
|
| Q |
101 |
gcatctgaactcgcatagctggtcatactaac--tggcctctctttataatgcttcggtttcagttacttcttgcgcttcaacgacattgtgaatttcgc |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
2682824 |
gcatctgaactctcatagctggtcatactaactgtggcctctctttataatgctttggtttcagttacttcttgcgcttcaacgacattgtgaattttgc |
2682923 |
T |
|
| Q |
199 |
cataatcagctccaaggca |
217 |
Q |
| |
|
||||||||||||||||||| |
|
|
| T |
2682924 |
cataatcagctccaaggca |
2682942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 170; Significance: 2e-91; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 203
Target Start/End: Complemental strand, 34218016 - 34217817
Alignment:
| Q |
1 |
aatttgacagaaaatgccttttatgcacataatatataatatagctttcagcagcctaactcacattgaaaattgtcccatggttgcaagtggaacagct |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34218016 |
aatttgacagaaaatgccttttatgcacataatatata-----gctttcagcagcctaactcacattgaaaattgtcccatggttgcaagtggaacagct |
34217922 |
T |
|
| Q |
101 |
gcatctgaactcgcatagctggtcatactaac--tggcctctctttataatgcttcggtttcagttacttcttgcgcttcaacgacattgtgaatttcgc |
198 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34217921 |
gcatctgaactctcatagctggtcatactaactgtggcctctctttataatgcttcggtttcagttacttcttgcgcttcaacgacattgtgaatttcgc |
34217822 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 62; Significance: 6e-27; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 62; E-Value: 6e-27
Query Start/End: Original strand, 152 - 221
Target Start/End: Original strand, 5421000 - 5421069
Alignment:
| Q |
152 |
ttcggtttcagttacttcttgcgcttcaacgacattgtgaatttcgccataatcagctccaaggcatttc |
221 |
Q |
| |
|
|||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
5421000 |
ttcggtttcagttacttcttgcgcttcagcgacattgtgaatttcaccataatcagctccaaggcatttc |
5421069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 88 - 134
Target Start/End: Complemental strand, 27147028 - 27146982
Alignment:
| Q |
88 |
aagtggaacagctgcatctgaactcgcatagctggtcatactaactg |
134 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27147028 |
aagtggaacagctgcatctgaactcgcatagctggtcatactaactg |
27146982 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 1 - 88
Target Start/End: Complemental strand, 27147127 - 27147047
Alignment:
| Q |
1 |
aatttgacagaaaatgccttttatgcacataatatataatatagctttcagcagcctaactcacattgaaaattgtcccatggttgca |
88 |
Q |
| |
|
||||||||||||||||||||||||||||||||| | ||||| |||| || |||||||||||| |||| ||||||||||||||| |
|
|
| T |
27147127 |
aatttgacagaaaatgccttttatgcacataat-----acatagc--tcagtagtctaactcacattcaaaactgtcccatggttgca |
27147047 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University