View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20248_high_4 (Length: 575)
Name: NF20248_high_4
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_high_4 |
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| [»] scaffold0402 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 434; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 434; E-Value: 0
Query Start/End: Original strand, 18 - 561
Target Start/End: Original strand, 2714 - 3270
Alignment:
| Q |
18 |
aaagcaaacatatatgtttattttttggatttttaaaatatcatgctataaatccagaactttcttgaatgtatgagataatagttatcatcactctctc |
117 |
Q |
| |
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||||||||||||||||| || |||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
2714 |
aaagcaaacatatatgtgcatattttggatttttaaaaaatcatgctataaatccagaacttttttgaatgtatgagataatagttatcatcactctctc |
2813 |
T |
|
| Q |
118 |
ttacgtaaatgattttaatttttcttttcaatagaagttataattcacagcttttatgttcagctgttgtacgatcctttcatccttggtagttagctct |
217 |
Q |
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||||||||| |||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2814 |
ttacgtaaa-gattttaaattttcttttcaatagaagttatacttcacagcttttatgttcagctgttgtacgatcctttcatccttggtagttagctct |
2912 |
T |
|
| Q |
218 |
agattgtctcatattttggatgattt-------------atatcaatcattttctactgcataatcctgctaacaaatgttttgaaatcccgattttatt |
304 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| ||||||||||||||||||||||||||||| |
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| T |
2913 |
agattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagcataatcctgccaacaaatgttttgaaatcccgattttatt |
3012 |
T |
|
| Q |
305 |
gttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgtcatttaatttgatgactcttt-ggactgctctttgattt |
403 |
Q |
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|||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
3013 |
gttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgtcatttaatttgatgactcttttggactgctctttgattt |
3112 |
T |
|
| Q |
404 |
ttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtca |
503 |
Q |
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|||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3113 |
ttcttttaactggttctcttatgtaatggtttcaattgaaatttgttgagttaaataatagtaactttctacaatttcttatcctcattttctttagtca |
3212 |
T |
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| Q |
504 |
tcattttccagcggaattgcaaggcaattggaaggaaaaccttctatcgtagtataat |
561 |
Q |
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||||||||||||||||||||||||||| |||||||||||||||||||| ||||||||| |
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| T |
3213 |
tcattttccagcggaattgcaaggcaagtggaaggaaaaccttctatcttagtataat |
3270 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 269; Significance: 1e-150; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 269; E-Value: 1e-150
Query Start/End: Original strand, 180 - 506
Target Start/End: Original strand, 19335775 - 19336115
Alignment:
| Q |
180 |
gctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgcat |
266 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||| |
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| T |
19335775 |
gctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccactgcat |
19335874 |
T |
|
| Q |
267 |
aatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgtc |
366 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19335875 |
aatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctctgattccccaaagggagcaatatgtc |
19335974 |
T |
|
| Q |
367 |
atttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatagt |
465 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
19335975 |
atttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaattttgttgagttaaataatagt |
19336074 |
T |
|
| Q |
466 |
aactttctacaatttcttatcctcattttctttagtcatca |
506 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
19336075 |
aactttctacaatttcttatcctcattttctttagtcatca |
19336115 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0402 (Bit Score: 262; Significance: 1e-146; HSPs: 1)
Name: scaffold0402
Description:
Target: scaffold0402; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 179 - 506
Target Start/End: Original strand, 14933 - 15274
Alignment:
| Q |
179 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgca |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
14933 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagca |
15032 |
T |
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| Q |
266 |
taatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgt |
365 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
15033 |
aaatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgt |
15132 |
T |
|
| Q |
366 |
catttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
464 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15133 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
15232 |
T |
|
| Q |
465 |
taactttctacaatttcttatcctcattttctttagtcatca |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
15233 |
taactttctacaatttcttatcctcattttctttagtcatca |
15274 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 179 - 506
Target Start/End: Complemental strand, 17939010 - 17938669
Alignment:
| Q |
179 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgattt-------------atatcaatcattttctactgca |
265 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || ||| |
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| T |
17939010 |
agctgttgtacgatcctttcatccttggtagttagctctagattgtctcatattttggatgatttgtattagccttctatatcaatcattttccacagca |
17938911 |
T |
|
| Q |
266 |
taatcctgctaacaaatgttttgaaatcccgattttattgttatttccatatttctcggacatataattttcctctgattccccaaagggagcaatatgt |
365 |
Q |
| |
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|||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
17938910 |
aaatcctgccaacaaatgttttgaaatcccgattttattgttatttctatatttctcggacatataattttcctatgattccccaaagggagcaatatgt |
17938811 |
T |
|
| Q |
366 |
catttaatttgatgactc-tttggactgctctttgatttttcttttaactgcttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
464 |
Q |
| |
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|||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938810 |
catttaatttgatgactcttttggactgctctttgatttttcttttaactggttctcttatgtaatggtttaaattgaaatttgttgagttaaataatag |
17938711 |
T |
|
| Q |
465 |
taactttctacaatttcttatcctcattttctttagtcatca |
506 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| |
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| T |
17938710 |
taactttctacaatttcttatcctcattttctttagtcatca |
17938669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 122 - 159
Target Start/End: Complemental strand, 22487726 - 22487689
Alignment:
| Q |
122 |
gtaaatgattttaatttttcttttcaatagaagttata |
159 |
Q |
| |
|
|||||||||||||| |||| |||||||||||||||||| |
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| T |
22487726 |
gtaaatgattttaaattttattttcaatagaagttata |
22487689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 99; Significance: 1e-48; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 99; E-Value: 1e-48
Query Start/End: Original strand, 18 - 120
Target Start/End: Complemental strand, 4792545 - 4792443
Alignment:
| Q |
18 |
aaagcaaacatatatgtttattttttggatttttaaaatatcatgctataaatccagaactttcttgaatgtatgagataatagttatcatcactctctc |
117 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
4792545 |
aaagcaaacatatatgtttattttttggatttttaaaatatcatgctataaatccagaactttcttgaatgtatgagataatagttatcatcactctttc |
4792446 |
T |
|
| Q |
118 |
tta |
120 |
Q |
| |
|
||| |
|
|
| T |
4792445 |
tta |
4792443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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