View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20248_high_6 (Length: 474)
Name: NF20248_high_6
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_high_6 |
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| [»] scaffold0191 (1 HSPs) |
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| [»] scaffold0037 (1 HSPs) |
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Alignment Details
Target: scaffold0191 (Bit Score: 323; Significance: 0; HSPs: 1)
Name: scaffold0191
Description:
Target: scaffold0191; HSP #1
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 57 - 460
Target Start/End: Original strand, 19149 - 19554
Alignment:
| Q |
57 |
atctcacaagcacttagataagctcaaatgagtcaaaattgttgagcataatctccttttctcttcaggagaagcaaccctttgtttctcatgctagaga |
156 |
Q |
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| T |
19149 |
atctcacaaacacttaagtaagctcaaatgagtcaaaattgttgagaataatctccttttctcttcaggagaagcaaccctttgtttctcatgctagaga |
19248 |
T |
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| Q |
157 |
attggacaataagcaccaagaagctttgaaataggatgctaatgggaccattaaggtaatttcacaatgcaaatcttgatcttgtgttttagtatatgtt |
256 |
Q |
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| T |
19249 |
attggacaataagcaccaagaagctttgaaacacgatgctattgggatcattaaggtaatttcacaatgcaaatcttgatcttgtgttttagtatatgtt |
19348 |
T |
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| Q |
257 |
gttattgaaaaatagattaaaagaaaacctgagttgctcctttttggtttaaaaggaaatatgatattgctcctatcattgtagaaactgttacaagctt |
356 |
Q |
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|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
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| T |
19349 |
gttactgaaaaatagattaaaagaaaacctgagttgctcctttttggtttaaaaggaaatatgatattgctcctatcattgtagaaagtgttacaagctt |
19448 |
T |
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| Q |
357 |
tattagattcttttgaggagattctgtggaccgttatagaga--ttggttcaaacacagtttgaaaaaactctgtttatgtgccttgcctcgtttcttat |
454 |
Q |
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| T |
19449 |
tattagattcttttgaggagattttgtggacctgtatagtgactgtggttcaaacacagtttgaaaaaactctattgatgtgcctttcctcgtttcttat |
19548 |
T |
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| Q |
455 |
cctttg |
460 |
Q |
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| T |
19549 |
cctttg |
19554 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 116 - 252
Target Start/End: Original strand, 10430469 - 10430604
Alignment:
| Q |
116 |
tctcttcaggagaagcaaccctttgtttctcatgctagagaattggacaataagcaccaagaagctttgaaataggatgctaatgggaccattaaggtaa |
215 |
Q |
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| T |
10430469 |
tctcttcaggagaggcaaccatttgtttctcatgctagagaattggacaataaacaccaagatgctttgaaacaagaggcttatgagatcataaaggtaa |
10430568 |
T |
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| Q |
216 |
tttcacaatgcaaatcttgatcttgtgttttagtata |
252 |
Q |
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| T |
10430569 |
gttgaaaat-caaatgttgatcttgttttttaatata |
10430604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0037 (Bit Score: 56; Significance: 5e-23; HSPs: 1)
Name: scaffold0037
Description:
Target: scaffold0037; HSP #1
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 116 - 187
Target Start/End: Original strand, 35973 - 36044
Alignment:
| Q |
116 |
tctcttcaggagaagcaaccctttgtttctcatgctagagaattggacaataagcaccaagaagctttgaaa |
187 |
Q |
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| T |
35973 |
tctcttcaggagaggcaaccatttgtttctcatgctagagaattggacaataaacaccaagatgctttgaaa |
36044 |
T |
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