View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20248_high_7 (Length: 454)
Name: NF20248_high_7
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_high_7 |
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Alignment Details
Target: chr8 (Bit Score: 418; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 18 - 443
Target Start/End: Original strand, 32813484 - 32813909
Alignment:
| Q |
18 |
ttcaatagccttaacagcagcttcagctggtagaaagtcttcaacattgactattttgttctcattcttcttgtctagtgtggaaagttaaggacacaca |
117 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32813484 |
ttcaatagccttaacagcagcttcagctggtagaaagtcttcaacattgactattttgttctcattcttcttgtctagtgtggaaagttaaggacacaca |
32813583 |
T |
|
| Q |
118 |
acatatatgggaataacaccaacagaagcattggtgaaagcatttaaagggtcatggtgaaataaatcatctaagaacatattgtcaaaaattatcagtt |
217 |
Q |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32813584 |
acatatatgggaattacaccaacagaagcattggtgaaagcatttaaagggtcatggtgaaataaatcatctaagaacatattgtcaaaaattatcagtt |
32813683 |
T |
|
| Q |
218 |
cttcattgcaaataacaggatacagtcctcaaagaatcttctaatttcagcaagcctatgtggagggagctccttgatgtccttgtaatggcggtactca |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32813684 |
cttcattgcaaataacaggatacagtcctcaaagaatcttctaatttcagcaagcctatgtggagggagctccttgatgtccttgtaatggcggtactca |
32813783 |
T |
|
| Q |
318 |
gggtcatcagcacaaactgctatgatcttgtcatccttctctccctgtgacagaattcaaagggaggaaaagtcaaagcatgtcatggcattcacatata |
417 |
Q |
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| T |
32813784 |
ggatcatcagcacaaactgctatgatcttgtcatccttctctccctgtgacagaattcaaagggaggaaaagtcaaagcatgtcatggcattcacatata |
32813883 |
T |
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| Q |
418 |
tctgtaggctgtagcacattgttcat |
443 |
Q |
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| T |
32813884 |
tctgtaggctgtagcacattgttcat |
32813909 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 89; Significance: 1e-42; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 224 - 364
Target Start/End: Complemental strand, 7987354 - 7987214
Alignment:
| Q |
224 |
tgcaaataacaggatacagtcctcaaagaatcttctaatttcagcaagcctatgtggagggagctccttgatgtccttgtaatggcggtactcagggtca |
323 |
Q |
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|||||||||||||||||| ||||||||||||||||| |||||||| | || ||||||||| ||||| |||||||| ||||||||||| | ||||||||| |
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| T |
7987354 |
tgcaaataacaggatacaatcctcaaagaatcttcttatttcagccaaccgatgtggaggaagctctttgatgtctgtgtaatggcggaattcagggtca |
7987255 |
T |
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| Q |
324 |
tcagcacaaactgctatgatcttgtcatccttctctccctg |
364 |
Q |
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| T |
7987254 |
tcagcacaaactgctatgatcttgtcatccctctcaccctg |
7987214 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 40 - 115
Target Start/End: Complemental strand, 7987806 - 7987731
Alignment:
| Q |
40 |
tcagctggtagaaagtcttcaacattgactattttgttctcattcttcttgtctagtgtggaaagttaaggacaca |
115 |
Q |
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| T |
7987806 |
tcagctggtagaaaatcgtcaacatcaacttttttgttctcattcttcttgtctagtgtggctagctaaggacaca |
7987731 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 5e-17; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 275 - 364
Target Start/End: Complemental strand, 29369169 - 29369080
Alignment:
| Q |
275 |
atgtggagggagctccttgatgtccttgtaatggcggtactcagggtcatcagcacaaactgctatgatcttgtcatccttctctccctg |
364 |
Q |
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||||||||||||||||||||| || |||||||| | |||||||| ||||||||||| || || |||||||||||||| ||||| ||||| |
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| T |
29369169 |
atgtggagggagctccttgatatcattgtaatgcctatactcaggatcatcagcacagacagcaatgatcttgtcatctttctcaccctg |
29369080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 276 - 364
Target Start/End: Complemental strand, 43548944 - 43548856
Alignment:
| Q |
276 |
tgtggagggagctccttgatgtccttgtaatggcggtactcagggtcatcagcacaaactgctatgatcttgtcatccttctctccctg |
364 |
Q |
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|||||||||||||||||||| || |||||||| | |||||||| ||||||||||| || || || ||||||||||| ||||| ||||| |
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| T |
43548944 |
tgtggagggagctccttgatatcattgtaatgcctatactcaggatcatcagcacagacagcaattatcttgtcatctttctcgccctg |
43548856 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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