View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20248_low_11 (Length: 347)
Name: NF20248_low_11
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_low_11 |
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Alignment Details
Target: chr3 (Bit Score: 303; Significance: 1e-170; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 5 - 331
Target Start/End: Original strand, 47404634 - 47404960
Alignment:
| Q |
5 |
agtgagatgaacagtagaagcaagaggcacaagaatgagaatttcattagtcatatttctgcaaacaaatcaatcactaataaccaagtgtaatttccta |
104 |
Q |
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| T |
47404634 |
agtgacatcaacagtagaagcaagaggcacaagaatgagaatgtcattggtcatatttctgcaaacaaatcaatcactaacaaccaagtgtaatttccta |
47404733 |
T |
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| Q |
105 |
caggttaaggtttactgctatgtcctggtttcttgagtgcaagatgagtacccgagaagttacacatggaaagctcatacaaggttggtgtagattgttc |
204 |
Q |
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| T |
47404734 |
caggttaaggtttactgctatgtcctggtatcttgagtgcaagatgagtacccgagaagttacacatggaaagctcatacaaggttggtgtagattgttc |
47404833 |
T |
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| Q |
205 |
ctgggaacttaaagctaaagttcatgcatttgaggttggtcgattatagcaaaagatttggaggttcttgagaacttaaatctaaatctcatacgtttga |
304 |
Q |
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| T |
47404834 |
ctgggaacttaaagctaaagttcatgcatttgaggttggtcgattatagcaaaagatttggaggttcttgagaacttaaatctaaatctcatacgtttga |
47404933 |
T |
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| Q |
305 |
gtttggtcgaccatagcaaaagatttg |
331 |
Q |
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| T |
47404934 |
gtttggtcgaccatagcaaaagatttg |
47404960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 209 - 280
Target Start/End: Original strand, 47404905 - 47404976
Alignment:
| Q |
209 |
gaacttaaagctaaagttcatgcatttgaggttggtcgattatagcaaaagatttggaggttcttgagaact |
280 |
Q |
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| T |
47404905 |
gaacttaaatctaaatctcatacgtttgagtttggtcgaccatagcaaaagatttggtggttcttgaaaact |
47404976 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 35 - 88
Target Start/End: Original strand, 47412935 - 47412989
Alignment:
| Q |
35 |
aagaatgagaatttcattagtcatatttctgcaaacaaatc-aatcactaataac |
88 |
Q |
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| T |
47412935 |
aagaatgagaatgccattgatcatatttctgcaaacaaatctaatcactaataac |
47412989 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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