View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20248_low_13 (Length: 314)
Name: NF20248_low_13
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_low_13 |
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Alignment Details
Target: chr5 (Bit Score: 278; Significance: 1e-155; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 15 - 296
Target Start/End: Complemental strand, 5823383 - 5823102
Alignment:
| Q |
15 |
gacaataacctcaaggtactttgtgttaggccaaattcttgggattatacgttcccaattttctccagaacattcttttgttatgaaatttgcttgttca |
114 |
Q |
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| T |
5823383 |
gacaataacctcaaggtactttgtgttaggccaaattcttgggattatacgttcccaattttctccagaacattcttttgttatgaaatttgcttgttca |
5823284 |
T |
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| Q |
115 |
gggtcaggtttcaatattttggacatgcattctttgattgaagggtctgtgactttagggtttagggttccagtggagatgtcatgagctaattgggccc |
214 |
Q |
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| T |
5823283 |
gggtcaggtttcaatattttggacatgcattctttgattgaagggtctgtgattttagggtttagggttccagtggagatgtcatgagctaattgggccc |
5823184 |
T |
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| Q |
215 |
aattaagttgaaggaattttatggctcttaaaagcccagaagcaaaaatagctccaactcttagaacttcatggcgcatgat |
296 |
Q |
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| T |
5823183 |
aattaagttgaaggaattttatggctcttaaaagcccagaagcaaaaatagctccaactcttagaacttcatggcgcatgat |
5823102 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 15 - 297
Target Start/End: Original strand, 5832683 - 5832965
Alignment:
| Q |
15 |
gacaataacctcaaggtactttgtgttaggccaaattcttgggattatacgttcccaattttctccagaacattcttttgttatgaaatttgcttgttca |
114 |
Q |
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| T |
5832683 |
gacaataacttcaagatactttgtgttaggccagattcttgggattatacgttcccaattgtctcctgaacattcttttgtaacgaatttcgcgagttca |
5832782 |
T |
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| Q |
115 |
gggtcaggtttcaatattttggacatgcattctttgattgaagggtctgtgactttagggtttagggttccagtggagatgtcatgagctaattgggccc |
214 |
Q |
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| T |
5832783 |
ggattcggtttaagtattttcgacatgcactgtttgatagaaggatcagtgatttttgggtttagggttcctgtttcaatgtcatggactaattcagccc |
5832882 |
T |
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| Q |
215 |
aattaagttgaaggaattttatggctcttaaaagcccagaagcaaaaatagctccaactcttagaacttcatggcgcatgatt |
297 |
Q |
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|||| || |||||||| | |||||||| | |||||| ||||| |||| ||||| |||| ||||||||||||||||||||| |
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| T |
5832883 |
aattcagctgaaggaacctaatggctctgagaagcccggaagcgaaaactgctccgactcgaagaacttcatggcgcatgatt |
5832965 |
T |
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