View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20248_low_24 (Length: 239)
Name: NF20248_low_24
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_low_24 |
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Alignment Details
Target: chr1 (Bit Score: 198; Significance: 1e-108; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 20 - 221
Target Start/End: Original strand, 50183553 - 50183754
Alignment:
| Q |
20 |
cgtataatattgtaacgcattacaatatcacagaagaagagagatcaaatcaatatgtcaataatggatcaatcacctttcacgactccaagaggatccc |
119 |
Q |
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| T |
50183553 |
cgtataatattgtaacgcattacaatatcacagaagaagagagatcaaatcaatatgtcaataatggatcaatcacctttcacgactccaagaggatccc |
50183652 |
T |
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| Q |
120 |
tttcatcaagcattggtaacgctgctgaacttgaagccaatctcactctcagtgataagctcagggttttcaagagttcttcctttgatcccagtgccta |
219 |
Q |
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| T |
50183653 |
tttcatcaagcattggtaacgctgctgaacttgaagccaatctcactctcagtgataagctcagggttttcaaaagttcttcctttgatcccagtgccta |
50183752 |
T |
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| Q |
220 |
tg |
221 |
Q |
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|| |
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| T |
50183753 |
tg |
50183754 |
T |
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Target: chr6 (Bit Score: 75; Significance: 1e-34; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 56 - 221
Target Start/End: Complemental strand, 16298330 - 16298162
Alignment:
| Q |
56 |
aagagagatcaaatcaatatgtcaataatggatcaatcacctttcacgactccaagaggatccctttcatcaagcattggtaacgctgctgaacttgaag |
155 |
Q |
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||||||||||||||||| |||||||| |||||||| ||| ||| |||||||||||||||| |||||||||||||||| | | |||||||||||||| |
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| T |
16298330 |
aagagagatcaaatcaaaatgtcaat---ggatcaattaccattcgtgactccaagaggatccgtttcatcaagcattggaagtgttgctgaacttgaag |
16298234 |
T |
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| Q |
156 |
cc------aatctcactctcagtgataagctcagggttttcaagagttcttcctttgatcccagtgcctatg |
221 |
Q |
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| T |
16298233 |
ccaatcccaatctcactctcagtgataagcttagggttttcaaaagctcttcatttgatcccaatgcctatg |
16298162 |
T |
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