View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20248_low_28 (Length: 228)
Name: NF20248_low_28
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_low_28 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 188; Significance: 1e-102; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 11 - 214
Target Start/End: Original strand, 38521570 - 38521773
Alignment:
| Q |
11 |
cgaagaatataagactattaaagaaattattacctgtttcacctgctcagctgttgatatcccgaagccaactgccactggcttcgttgttgccttaatt |
110 |
Q |
| |
|
|||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38521570 |
cgaataatgtaagactattaaagaaattattacctgtttcacctgctcagctgttgatatcccgaagccaactgccactggcttcgttgttgccttaatt |
38521669 |
T |
|
| Q |
111 |
ttaaaaaagaatcaataaagagtgtaagtatcaagattcactaaccaaatttgagctgcatttgagtttattgcaatctacggtcataagattagagtcg |
210 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
38521670 |
ttaaaaaagaatcaataaagagtgtaagtatcaagattcactaaccaaatttgagctacatttgagtttattgcaatctaccgtcataagattagagtcg |
38521769 |
T |
|
| Q |
211 |
ttgg |
214 |
Q |
| |
|
|||| |
|
|
| T |
38521770 |
ttgg |
38521773 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 43 - 111
Target Start/End: Complemental strand, 41391327 - 41391259
Alignment:
| Q |
43 |
cctgtttcacctgctcagctgttgatatcccgaagccaactgccactggcttcgttgttgccttaattt |
111 |
Q |
| |
|
|||| ||||| ||||||| |||||||||||| || ||||||||||| ||||| ||||||||||| |||| |
|
|
| T |
41391327 |
cctgcttcacatgctcaggtgttgatatcccaaaaccaactgccacaggcttagttgttgccttcattt |
41391259 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University