View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20248_low_31 (Length: 216)

Name: NF20248_low_31
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20248_low_31
NF20248_low_31
[»] chr5 (5 HSPs)
chr5 (1-199)||(35366409-35366607)
chr5 (54-188)||(35406152-35406286)
chr5 (4-188)||(35375966-35376150)
chr5 (1-191)||(35754371-35754561)
chr5 (4-156)||(35423257-35423409)
[»] chr1 (3 HSPs)
chr1 (1-192)||(10421017-10421208)
chr1 (1-188)||(10416130-10416317)
chr1 (1-188)||(10410417-10410604)
[»] chr2 (4 HSPs)
chr2 (100-188)||(30634853-30634941)
chr2 (100-188)||(30662582-30662670)
chr2 (38-188)||(30671262-30671412)
chr2 (38-151)||(30625668-30625781)
[»] chr7 (1 HSPs)
chr7 (48-199)||(29623617-29623765)


Alignment Details
Target: chr5 (Bit Score: 199; Significance: 1e-108; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 199
Target Start/End: Complemental strand, 35366607 - 35366409
Alignment:
Q  1 ttataaaaactatgaaagagatcaaaaccacgccgattacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttga 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35366607 ttataaaaactatgaaagagatcaaaaccacgccgattacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttga 35366508  T
Q  101 acatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacaccttctacgggaac 199  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35366507 acatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacaccttctacgggaac 35366409  T

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Target: chr5; HSP #2
Raw Score: 75; E-Value: 1e-34
Query Start/End: Original strand, 54 - 188
Target Start/End: Complemental strand, 35406286 - 35406152
Alignment:
Q  54 agtttctttttgagtgatcttttgtgttttttggcgggtaactttgaacatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccgg 153  Q
    ||||||||||| |  ||| |||||||||| ||||| ||||||||   |||||||||||||| ||||||| ||||||||||||||||||| ||||||||||    
T  35406286 agtttcttttttaaagattttttgtgtttcttggcaggtaacttaatacatggaggaagttgcaattgaggtattcctccacaaaggttcttgtttccgg 35406187  T
Q  154 ttaatgaaattgccgaaacattgctaaagacacct 188  Q
    ||| ||||||||  |||||||||||||||||||||    
T  35406186 ttagtgaaattgatgaaacattgctaaagacacct 35406152  T

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Target: chr5; HSP #3
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 4 - 188
Target Start/End: Complemental strand, 35376150 - 35375966
Alignment:
Q  4 taaaaactatgaaagagatcaaaaccacgccgattacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttgaaca 103  Q
    ||||| |||||| |||||||| |||| | || ||||||||||  |||||||||||||||||  | | ||||||||| || ||||| |||| |||   |||    
T  35376150 taaaagctatgacagagatcacaaccccaccaattacactgatgaggataagtttcttttttggagttcttttgtgcttcttggcaggtaccttaagaca 35376051  T
Q  104 tggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacacct 188  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||| || |  ||||| |||||||||    
T  35376050 tggaggaagtttcaattgaggtattcctccacaaaggttcttgtttccagttagtgaaattgcggagatcttgctgaagacacct 35375966  T

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Target: chr5; HSP #4
Raw Score: 71; E-Value: 2e-32
Query Start/End: Original strand, 1 - 191
Target Start/End: Complemental strand, 35754561 - 35754371
Alignment:
Q  1 ttataaaaactatgaaagagatcaaaaccacgccgattacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttga 100  Q
    ||||| || |||||||||||||||||||| | || | |||| |||  |||| |||||||||||| || ||||||||||||||||||| ||||| |||  |    
T  35754561 ttatagaagctatgaaagagatcaaaaccccaccaagtacaatgatgaggacaagtttcttttttagagatcttttgtgttttttggtgggtaccttaaa 35754462  T
Q  101 acatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacaccttct 191  Q
    |||||||||||| ||||||||| ||||||| ||||| | ||| || |||||  ||| ||||||||| | ||||||||| || |||||||||    
T  35754461 acatggaggaagcttcaattgaggtattcccccacataagttcttatttccaattagtgaaattgctgtaacattgctgaatacaccttct 35754371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 4 - 156
Target Start/End: Complemental strand, 35423409 - 35423257
Alignment:
Q  4 taaaaactatgaaagagatcaaaaccacgccgattacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttgaaca 103  Q
    ||||| |||||| |||||||| |||| | || ||||||||||  ||||||||||| | |||  | | ||||||||| || ||||| |||| |||   |||    
T  35423409 taaaagctatgacagagatcacaaccccaccaattacactgatgaggataagtttttcttttggagttcttttgtgcttcttggcaggtaccttaagaca 35423310  T
Q  104 tggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggtta 156  Q
    ||||||||||||||||||| ||||||||||||||||||| |||||||| ||||    
T  35423309 tggaggaagtttcaattgaggtattcctccacaaaggttcttgtttccagtta 35423257  T

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Target: chr1 (Bit Score: 152; Significance: 1e-80; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 10421017 - 10421208
Alignment:
Q  1 ttataaaaactatgaaagagatcaaaaccacgccgattacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttga 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||| |||||  ||| ||| ||    
T  10421017 ttataaaaactatgaaagagatcaaaaccacgccaattacactgataaggataagtttctttttgagtgatcttttgtgtttcttggcaagtaccttaga 10421116  T
Q  101 acatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacaccttcta 192  Q
    ||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||    
T  10421117 acatggaggaaatttcaattgaggtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacacgttcta 10421208  T

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Target: chr1; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 10416130 - 10416317
Alignment:
Q  1 ttataaaaactatgaaagagatcaaaaccacgccgattacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttga 100  Q
    |||||||| |||||| |||||||| || | | || ||||||||||  ||||||||||||||||| || ||||| |||||||| ||||| |||| |||       
T  10416130 ttataaaagctatgacagagatcacaaacccaccaattacactgatgaggataagtttcttttttagagatctcttgtgtttcttggcaggtaccttaag 10416229  T
Q  101 acatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacacct 188  Q
    |||||||||||||||||||||| ||||||||||||||||||| |||||||| |||| ||||||||| || || |||||||||||||||    
T  10416230 acatggaggaagtttcaattgaggtattcctccacaaaggttcttgtttccagttagtgaaattgctgagactttgctaaagacacct 10416317  T

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Target: chr1; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 188
Target Start/End: Original strand, 10410417 - 10410604
Alignment:
Q  1 ttataaaaactatgaaagagatcaaaaccacgccgattacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttga 100  Q
    |||||||| |||||| ||| |||| |||| |||||||||||||||  ||||||||||||||||| || ||||| |||||||| || ||||||| |||       
T  10410417 ttataaaagctatgacagaaatcacaaccccgccgattacactgatgaggataagtttcttttttagagatctcttgtgtttctttgcgggtaccttaag 10410516  T
Q  101 acatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacacct 188  Q
      |||||||||||| |||| || ||||||||||||||||||| |||||||| |||| ||||||||| || ||||||| ||||||||||    
T  10410517 gaatggaggaagttccaatcgaggtattcctccacaaaggttcttgtttccagttagtgaaattgctgagacattgccaaagacacct 10410604  T

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Target: chr2 (Bit Score: 53; Significance: 1e-21; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 30634941 - 30634853
Alignment:
Q  100 aacatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacacct 188  Q
    ||||||||||||| |||||| ||  |||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||| ||||||    
T  30634941 aacatggaggaagcttcaatggagatattcctccacaaaggttcttgtttccggttagtaaaattgctgaaacattgctaaatacacct 30634853  T

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Target: chr2; HSP #2
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 100 - 188
Target Start/End: Complemental strand, 30662670 - 30662582
Alignment:
Q  100 aacatggaggaagtttcaattgaagtattcctccacaaaggtttttgtttccggttaatgaaattgccgaaacattgctaaagacacct 188  Q
    ||||||||||||| |||||| ||  |||||||||||||||||| ||||||||||||| | ||||||| |||||||||||||| ||||||    
T  30662670 aacatggaggaagcttcaatggagatattcctccacaaaggttcttgtttccggttagtaaaattgctgaaacattgctaaatacacct 30662582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 38 - 188
Target Start/End: Complemental strand, 30671412 - 30671262
Alignment:
Q  38 tacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttgaacatggaggaagtttcaattgaagtattcctccacaa 137  Q
    ||||||| ||| |||||||||| ||||||  |   |||| ||||| |||| ||| | |||  ||||||||||||| |||||| ||  |||||||||||||    
T  30671412 tacactgccaatgataagtttccttttgaaagggtttttatgtttcttggagggaaccttaaaacatggaggaagcttcaatggagatattcctccacaa 30671313  T
Q  138 aggtttttgtttccggttaatgaaattgccgaaacattgctaaagacacct 188  Q
    ||||| |||||||| |||| | ||||||| |||||||||||||| ||||||    
T  30671312 aggttcttgtttcctgttagtaaaattgctgaaacattgctaaatacacct 30671262  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 38 - 151
Target Start/End: Complemental strand, 30625781 - 30625668
Alignment:
Q  38 tacactgacaaggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttgaacatggaggaagtttcaattgaagtattcctccacaa 137  Q
    ||||||| ||| |||||||||| ||||||  |   |||| ||||| |||| ||| | |||  ||||||||||||| |||||| ||  |||||||||||||    
T  30625781 tacactgccaatgataagtttccttttgaaagggtttttatgtttcttggagggaaccttaaaacatggaggaagcttcaatggagatattcctccacaa 30625682  T
Q  138 aggtttttgtttcc 151  Q
    ||||| ||||||||    
T  30625681 aggttcttgtttcc 30625668  T

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Target: chr7 (Bit Score: 50; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 50; E-Value: 8e-20
Query Start/End: Original strand, 48 - 199
Target Start/End: Original strand, 29623617 - 29623765
Alignment:
Q  48 aggataagtttctttttgagtgatcttttgtgttttttggcgggtaactttgaacatggaggaagtttcaattgaagtattcctccacaaaggtttttgt 147  Q
    ||||||| |||||||||||| |||  ||||||||| |||| | | |   |||| |||| |||||| ||||||||| |||| |||||||||||||| || |    
T  29623617 aggataattttctttttgagagataatttgtgtttcttggagagca---ttgagcatgcaggaagcttcaattgaggtatccctccacaaaggttcttat 29623713  T
Q  148 ttccggttaatgaaattgccgaaacattgctaaagacaccttctacgggaac 199  Q
    ||||||||| ||||||||| |  ||||||||||||| |||| | ||||||||    
T  29623714 ttccggttagtgaaattgctgtgacattgctaaagatacctcccacgggaac 29623765  T

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