View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF20248_low_32 (Length: 210)
Name: NF20248_low_32
Description: NF20248
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20248_low_32 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 177; Significance: 1e-95; HSPs: 6)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 177; E-Value: 1e-95
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 27105602 - 27105778
Alignment:
| Q |
19 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
118 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105602 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
27105701 |
T |
|
| Q |
119 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27105702 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctct |
27105778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 141; E-Value: 4e-74
Query Start/End: Original strand, 19 - 195
Target Start/End: Original strand, 27098603 - 27098779
Alignment:
| Q |
19 |
cactttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaa |
118 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||| ||||||||| || | |||||||||||||| |||||||||||||||||||| |||||||||||| |
|
|
| T |
27098603 |
cactttccttcatcaagctcaacttaagccttgttatcatttcaccatcaatattaaaacaatattgcttcataactgtagtgttgtgttgattcagaaa |
27098702 |
T |
|
| Q |
119 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaataagtctct |
195 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
27098703 |
aggtgaaaatgcaacagattccttgttcatagggctttctggaaatggttgttcagttattgatccaataagtctct |
27098779 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 61; E-Value: 2e-26
Query Start/End: Original strand, 22 - 186
Target Start/End: Original strand, 27062811 - 27062975
Alignment:
| Q |
22 |
tttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaagg |
121 |
Q |
| |
|
|||| |||||||||||||||||||| |||||| | |||| ||||| || ||||||||||||| ||| |||| | |||| || |||||||| ||| || |
|
|
| T |
27062811 |
tttcgttcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaacaatattgcttaataattttagtattaggttgattcacaaaggg |
27062910 |
T |
|
| Q |
122 |
tgaaaatgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaa |
186 |
Q |
| |
|
|||||||||||||||||| ||| ||| |||| || ||||||||||||| ||||||||| ||||| |
|
|
| T |
27062911 |
tgaaaatgcaacagattctctgtccatggggcattgtggaaatggttgtgtagttattgttccaa |
27062975 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 27 - 186
Target Start/End: Original strand, 27069889 - 27070048
Alignment:
| Q |
27 |
ttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatttcttcataactgtagtgttgtcttgattcagaaaaggtgaaa |
126 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||| ||||| || |||||| |||||| ||| |||| |||||| || |||||||| ||| ||||||| |
|
|
| T |
27069889 |
ttcatcaaactcaacttaagtcttgttatcgtttcgccctctactttaaaagaatattgcttaataattgtagtattagtttgattcacaaagggtgaaa |
27069988 |
T |
|
| Q |
127 |
atgcaacagattccttgttcatagggctttctggaaatggttgtttagttattgatccaa |
186 |
Q |
| |
|
|||||||||||| ||| ||| || | || |||||| |||||| ||| ||||||||||| |
|
|
| T |
27069989 |
atgcaacagattttctgtccatgggacattgtggaaaaggttgtatagctattgatccaa |
27070048 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 22 - 84
Target Start/End: Original strand, 27085940 - 27086002
Alignment:
| Q |
22 |
tttccttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatt |
84 |
Q |
| |
|
|||| |||||||||||||||||||| || ||| |||||||||||| || ||||||||||||| |
|
|
| T |
27085940 |
tttcattcatcaaactcaacttaagtcttcttatcatttcaccctctactttaaaacaatatt |
27086002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 27 - 84
Target Start/End: Original strand, 27041467 - 27041524
Alignment:
| Q |
27 |
ttcatcaaactcaacttaagctttgttaacatttcaccctccacattaaaacaatatt |
84 |
Q |
| |
|
|||||||||||||| ||||| ||||| |||||||||||| || ||||||||||||| |
|
|
| T |
27041467 |
ttcatcaaactcaatttaagtcctgttatcatttcaccctctactttaaaacaatatt |
27041524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University