View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20249_high_1 (Length: 534)
Name: NF20249_high_1
Description: NF20249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20249_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 467; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 467; E-Value: 0
Query Start/End: Original strand, 15 - 526
Target Start/End: Complemental strand, 43027039 - 43026522
Alignment:
| Q |
15 |
agatagcaacaaaacaaaaagatcaaatcaaaaaccgagatcatcattttccacatccagtctcaagaaaaacctgtagacatgatcaaaggtggctgtt |
114 |
Q |
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| T |
43027039 |
agatagcaacaaaacaaagagatcaaatcaaaaaccgagatcatcattttccacatccagtctcaagaaaaacctgtagacatgatcaaaggtggctgtt |
43026940 |
T |
|
| Q |
115 |
tttcagttatgcatatagtaccaataatacaaaattatatagtgtagtccattgtaattgtaaacactgttctcagttatagataacttagaagtggctg |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43026939 |
tttcagttatgcatatagtaccaataatacaaaattatatagtgtagtccattgtaattgtaaacactgttctcagttatagataacttagaagtggctg |
43026840 |
T |
|
| Q |
215 |
ttgcacgatttatcaattcttttttaactgagctgaatgtttcatcaaatatgacttcatgatctgcatcttttagttcttataagcaatgaaatagata |
314 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
43026839 |
ttgcacgatttatcaattcttttttaactgagctgaatgtttcatcaaatatgacttcatgatgtgcatcttttagttcttataagcaatgaaatagata |
43026740 |
T |
|
| Q |
315 |
catatggacctgaagcatgcactgattccagttgttttattcagttcaagcggctaagcaatgtagcaacatgctttcttctgttggtcttagtagttaa |
414 |
Q |
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||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
43026739 |
catatggacctgaagcatgcactgattcctgttgttttattcagttcaagcggctaagcaatgtagcaacatgctttcttctgttggtcttaatagttaa |
43026640 |
T |
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| Q |
415 |
cgcgtcaaatgtctagcatggtttcactgaactcatctttatgtgtttccattcttgtgtgctaaattgtttcgcaga------agtatcattattaact |
508 |
Q |
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|| ||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
43026639 |
cgtgtcaaatgtctagcatggtttcactgaactcatctttctgtgtttccattcttgtgtgctaaattgtttcgcagatattgttgtatcattattaact |
43026540 |
T |
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| Q |
509 |
tctttatatatgatgatg |
526 |
Q |
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|||||||||||||||||| |
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| T |
43026539 |
tctttatatatgatgatg |
43026522 |
T |
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