View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20249_low_13 (Length: 227)
Name: NF20249_low_13
Description: NF20249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20249_low_13 |
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| [»] chr1 (4 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 14 - 227
Target Start/End: Original strand, 8138835 - 8139048
Alignment:
| Q |
14 |
agaaggatgggatgcacatgtcttcatatgccaacttgcaacttgatttgaaagtcaaattgttatgatcaaatttatttttcgtacaatccgttttaag |
113 |
Q |
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| T |
8138835 |
agaaggattggatgcacatgtcttcatatgccaacttgcaacttgatttgaaagtcaaattgttatgatcaaatttatttttcgtacaatccgttttaag |
8138934 |
T |
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| Q |
114 |
taaatgtatcaaaatcaaaatctattataataaatcaaaattaaaactatttgatctctatttcgaatgctaagnnnnnnnntaatgggaaaaattattc |
213 |
Q |
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| T |
8138935 |
taaatgtatcaaaatcaaaatctattataataaatcaaaattaaaactatttgatctctatttcgaatgctaagaaaaaaaataatgggaaaaattattc |
8139034 |
T |
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| Q |
214 |
ttccgtaacagttc |
227 |
Q |
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|||||||||||||| |
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| T |
8139035 |
ttccgtaacagttc |
8139048 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 7670824 - 7670694
Alignment:
| Q |
19 |
gatgggatgcacatgtcttcatatgccaacttgcaa-cttgattt-gaaagtcaaattgttatgatcaaatttatttttcgtacaatccgtttt-aagta |
115 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||| | |||||||| ||||| |
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| T |
7670824 |
gatgggatgcacatgccttcatatgccaacttgcaatcttgattttgaaagtccaattgttatgatcaaatttattttttgtatattccgtttttaagta |
7670725 |
T |
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| Q |
116 |
aatgtatcaaaatcaaaatctattataataa |
146 |
Q |
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| T |
7670724 |
aatgtatcaaaatcaaaatctattataataa |
7670694 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 87; E-Value: 7e-42
Query Start/End: Original strand, 19 - 146
Target Start/End: Complemental strand, 7709046 - 7708916
Alignment:
| Q |
19 |
gatgggatgcacatgtcttcatatgccaacttgcaa-cttgattt-gaaagtcaaattgttatgatcaaatttatttttcgtacaatccgtttt-aagta |
115 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||| | |||||||| ||||| |
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| T |
7709046 |
gatgggatgcacatgccttcatatgccaacttgcaatcttgattttgaaagtccaattgttatgatcaaatttattttttgtatattccgtttttaagta |
7708947 |
T |
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| Q |
116 |
aatgtatcaaaatcaaaatctattataataa |
146 |
Q |
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| T |
7708946 |
aatgtatcaaaatcaaaatctattataataa |
7708916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 19 - 109
Target Start/End: Original strand, 7709522 - 7709614
Alignment:
| Q |
19 |
gatgggatgcacatgtcttcatatgccaacttgcaa-cttgattt-gaaagtcaaattgttatgatcaaatttatttttcgtacaatccgttt |
109 |
Q |
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||||||||||||||| |||||||||||||||||||| |||||||| ||||||| ||||||||||||||||||||||||| ||| | ||||||| |
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| T |
7709522 |
gatgggatgcacatgccttcatatgccaacttgcaatcttgattttgaaagtccaattgttatgatcaaatttattttttgtatattccgttt |
7709614 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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