View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20249_low_2 (Length: 499)
Name: NF20249_low_2
Description: NF20249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20249_low_2 |
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| [»] scaffold0015 (3 HSPs) |
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Alignment Details
Target: scaffold0015 (Bit Score: 444; Significance: 0; HSPs: 3)
Name: scaffold0015
Description:
Target: scaffold0015; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 1 - 476
Target Start/End: Original strand, 11231 - 11706
Alignment:
| Q |
1 |
ggttcaagaagatgcatatccaaggatagaggatcaaattcaacactcatctatggctccaaagaaatatcagttaaaggaattggtcaaagcaacaaat |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
11231 |
ggttcaagaagatgcatatccaaggatagaggatcaaattcaacactcgtctatggctccaaagaaatatcagttaaaggaattggtcaaagcaacaaat |
11330 |
T |
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| Q |
101 |
ggattcagccatcagaacaaactcggccaaggcggatttggaactgtctataaaggaatccttggaaacaataaagagatagctgtgaagagagtctcga |
200 |
Q |
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| T |
11331 |
ggattcagccatcagaacaaactcggccaaggtggatttggaactgtctataaaggaatccttggaaacaataaagagatagctgtgaagagagtctcga |
11430 |
T |
|
| Q |
201 |
aggattctcgacaaggaaagcaagagtttatagcagaagttacaacaattggtagccttcaccacaaaaacttggtgaaactcattggttggtgctatga |
300 |
Q |
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| T |
11431 |
aggattctcgacaaggaaagcaagagtttatagcagaagttacaacaattggtagccttcaccacaaaaacttggtgaaactcattggttggtgctatga |
11530 |
T |
|
| Q |
301 |
gaaaaaagaacttctcattgtttacgagttcatgcctaatggaagcttagataagtacctgtttaaccaatcgagtgcactcgaattacattattcgaaa |
400 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||| |
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| T |
11531 |
gaaaaaagaacttctcattgtttacgagttcatgcctaatggaagcttagataagtacctgtttaaccaatcgagggaactcgaattacattattcgaaa |
11630 |
T |
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| Q |
401 |
gtacttgattggaaaactaggaatggcgtgatccgtgacgtggctcaagctttggattatcttcacgacggttgtg |
476 |
Q |
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| T |
11631 |
gtacttgattggaaaactaggaatggcgtgatccgtgatgtggctcaagcattggattatcttcatgatggttgtg |
11706 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #2
Raw Score: 277; E-Value: 1e-155
Query Start/End: Original strand, 1 - 476
Target Start/End: Complemental strand, 19508 - 19030
Alignment:
| Q |
1 |
ggttcaagaagatgcatatccaaggatagaggatcaaattcaacactcatctatggctccaaagaaatatcagttaaaggaattggtcaaagcaacaaat |
100 |
Q |
| |
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||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | || |||||| | |
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| T |
19508 |
ggttcaagaagatacatatccaaggattgaggatcaaattcaacactcatctatggctccaaagaaatatcgactaaaggaattgatgaatgcaacaggt |
19409 |
T |
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| Q |
101 |
ggattcagccatcagaacaaactcggccaaggcggatttggaactgtctataaaggaatccttggaaa---caataaagagatagctgtgaagagagtct |
197 |
Q |
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| T |
19408 |
ggattcagccatcagaacaagcttggtgagggtggatttggaaccgtttataagggaatccttggaaaaatcaataaagagatagctgtgaagagagtct |
19309 |
T |
|
| Q |
198 |
cgaaggattctcgacaaggaaagcaagagtttatagcagaagttacaacaattggtagccttcaccacaaaaacttggtgaaactcattggttggtgcta |
297 |
Q |
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| ||| |||| || ||||||||| |||| ||||| || ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19308 |
caaagaattcgcgtcaaggaaagaaagaatttatcgccgaagttacaacaattggaagccttcaccacaaaaacttggtgaaactcattggttggtgcta |
19209 |
T |
|
| Q |
298 |
tgagaaaaaagaacttctcattgtttacgagttcatgcctaatggaagcttagataagtacctgtttaaccaatcgagtgcactcgaattacattattcg |
397 |
Q |
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||| | ||||| |||||| ||||||| ||||||||||| |||||||| ||||| || ||||| |||||||||||||||| |||||||| |||||||||| |
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| T |
19208 |
tgaaagtaaagagcttctccttgtttatgagttcatgccaaatggaagtttagacaaatacctatttaaccaatcgagtgaactcgaatcacattattcg |
19109 |
T |
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| Q |
398 |
aaagtacttgattggaaaactaggaatggcgtgatccgtgacgtggctcaagctttggattatcttcacgacggttgtg |
476 |
Q |
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||||||||||||||||||||||||||||| ||||| ||||||||||| ||||| ||||||||||||||| | ||||||| |
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| T |
19108 |
aaagtacttgattggaaaactaggaatggtgtgattcgtgacgtggcgcaagcattggattatcttcacaatggttgtg |
19030 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0015; HSP #3
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 3 - 476
Target Start/End: Original strand, 36917 - 37393
Alignment:
| Q |
3 |
ttcaagaagatgcatatccaaggatagaggatcaaattcaacactcatctatggctccaaagaaatatcagttaaaggaattggtcaaagcaacaaatgg |
102 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||| |||| || ||||| ||||||||||||| ||||||||||| | ||||||||| ||| |
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| T |
36917 |
ttcaagaagatacatatccaaggatagaggatcaaattcagtactcgtcaatggcaccaaagaaatatcgactaaaggaattgatgaaagcaacaggtgg |
37016 |
T |
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| Q |
103 |
attcagccatcagaacaaactcggccaaggcggatttggaactgtctataaaggaatccttggaaa---caataaagagatagctgtgaagagagtctcg |
199 |
Q |
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| T |
37017 |
attcagccatcagaacaagcttggtgaagggggatttggaactgtttataagggattccttggaaaaaacaataaagagatagctgtgaagagagtctcg |
37116 |
T |
|
| Q |
200 |
aaggattctcgacaaggaaagcaagagtttatagcagaagttacaacaattggtagccttcaccacaaaaacttggtgaaactcattggttggtgctatg |
299 |
Q |
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||| |||| || ||||||||| |||| |||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37117 |
aagaattcacgtcaaggaaagaaagaatttatagccgaagttacaacaattggaagccttcaccacaaaaacttggtgaaactcattggttggtgctatg |
37216 |
T |
|
| Q |
300 |
agaaaaaagaacttctcattgtttacgagttcatgcctaatggaagcttagataagtacctgtttaaccaatcgagtgcactcgaattacattattcgaa |
399 |
Q |
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| || ||||| |||||| ||||||| ||||||||||| |||||||||||||| || ||||| ||||| || | || | | | || ||||||| ||| || |
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| T |
37217 |
aaaataaagagcttctccttgtttatgagttcatgccaaatggaagcttagacaaatacctatttaataaaacaagggaattagagttacatttttcaaa |
37316 |
T |
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| Q |
400 |
agtacttgattggaaaactaggaatggcgtgatccgtgacgtggctcaagctttggattatcttcacgacggttgtg |
476 |
Q |
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|||||||| ||||||||| || ||| | ||||| |||||||||| ||||| ||||||||||||||| | ||||||| |
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| T |
37317 |
agtacttgcttggaaaacaagaaatagtgtgattggtgacgtggcgcaagcattggattatcttcacaatggttgtg |
37393 |
T |
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