View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20249_low_3 (Length: 443)
Name: NF20249_low_3
Description: NF20249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20249_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 403; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 403; E-Value: 0
Query Start/End: Original strand, 11 - 425
Target Start/End: Original strand, 15097059 - 15097473
Alignment:
| Q |
11 |
caaaggcacatgaaaaagaactgctataagggagcaatacatcatgggttttgtcactttttgtgaccttaaaaacactctcaaaggttgtaacaaagta |
110 |
Q |
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| T |
15097059 |
caaaggcacatgaaaaagaactgctataagggagcaatacatcataggttttgtcactttttgtgaccttaaaaacactctcaaaggttgtaacaaagta |
15097158 |
T |
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| Q |
111 |
tttgtcaaaagatcaggtagtgaatagaaacaatatattgctgccatttcagtgattttaccatcttgtcccatgaaaagcatgattttttccaggttaa |
210 |
Q |
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| T |
15097159 |
tttgttaaaagatcaggtagtgaatagaaacaatatattgctgccatttcagtgattttaccatcttgtcccatgaaaagcatgattttttcaaggttaa |
15097258 |
T |
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| Q |
211 |
gccaaaggagacttatgggcacaattgccattagaagtatgagaaccatccgttgtagtgaaagggaaagaagttcccaatttttgctaccgaaagcttg |
310 |
Q |
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| T |
15097259 |
gccaaaggagacttatgggcacaattgccattagaagtatgagaaccatccgttgtagtgaaagggaaagaagttcccaatttttgctaccgaaagcttg |
15097358 |
T |
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| Q |
311 |
gctacaaaccggttcgagaccggaggcgaggccgacgagaacagagtaccctgttatgtttgtgaaacctatggacagtgcaccacctgctagctctaag |
410 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15097359 |
gctacaaaccggttcgagaccggaggcgaggccgacgagaacagagtaccctgttatgtttgtgaaacctatggacagtgcaccacctgctagctctaag |
15097458 |
T |
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| Q |
411 |
ctaccaagacgacca |
425 |
Q |
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| T |
15097459 |
ctaccaagacgacca |
15097473 |
T |
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