View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF20249_low_5 (Length: 334)
Name: NF20249_low_5
Description: NF20249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF20249_low_5 |
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Alignment Details
Target: chr7 (Bit Score: 286; Significance: 1e-160; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 16 - 328
Target Start/End: Complemental strand, 19680219 - 19679906
Alignment:
| Q |
16 |
aatttctgatcaaattgttaaagatgggtgagtgaaatttttgatccaaatgttaatgatgggtgagtgaaagtttaatgcttttttaattgattgtggt |
115 |
Q |
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| T |
19680219 |
aatttctgatcaaattgttaaagatgggtgagtgaaatttttgatccaaatgttaatgatgggtgagtgaaagtttaatgcttttttaattgattgtggt |
19680120 |
T |
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| Q |
116 |
ttgtgtgtgattttaagattatgggttttgtagtatggacatttctgatagaagacgctgttttgtgttcgacaatggcaagacacagatgcatgtgatt |
215 |
Q |
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| T |
19680119 |
ttgtgtgtgattttaagattatgggttttgtagtatcgacatttctgatagaagacgctgttttgtgttcgacaatggcaagacacagatgcatgtgatt |
19680020 |
T |
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| Q |
216 |
atattcaattatgttat-ttttaaaattattactagtgtcagtgttgtgtccagtgtctgtgtggtaattcatagctttggtgtttctgattcatcttca |
314 |
Q |
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| T |
19680019 |
atattcaattatgttattttttaaaattattactagtgtcggtgttgtgtccggtgtctttgtggtaattcatagctttggtgtttctgattcatcttca |
19679920 |
T |
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| Q |
315 |
aaggtgatattgtt |
328 |
Q |
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| T |
19679919 |
aaggtgacattgtt |
19679906 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 36; Significance: 0.00000000003; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 207 - 277
Target Start/End: Original strand, 19262935 - 19263006
Alignment:
| Q |
207 |
catgtgattatattcaattatgttatttt-taaaattattactagtgtcagtgttgtgtccagtgtctgtgt |
277 |
Q |
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| T |
19262935 |
catgtgattacattcaattatgtcatcttctcaaattattactggtgtcagtgtcgtgtccggtgtctgtgt |
19263006 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 211 - 253
Target Start/End: Complemental strand, 45267913 - 45267871
Alignment:
| Q |
211 |
tgattatattcaattatgttatttttaaaattattactagtgt |
253 |
Q |
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| T |
45267913 |
tgattacattcaattatgtcatttttaaaatcattactagtgt |
45267871 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 207 - 235
Target Start/End: Complemental strand, 50299115 - 50299087
Alignment:
| Q |
207 |
catgtgattatattcaattatgttatttt |
235 |
Q |
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| T |
50299115 |
catgtgattatattcaattatgttatttt |
50299087 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 207 - 259
Target Start/End: Complemental strand, 43754807 - 43754755
Alignment:
| Q |
207 |
catgtgattatattcaattatgttatttttaaaattattactagtgtcagtgt |
259 |
Q |
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| T |
43754807 |
catgtgattacattcaatgatataattttttaaattattactagtgtcagtgt |
43754755 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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