View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF20249_low_9 (Length: 238)

Name: NF20249_low_9
Description: NF20249
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF20249_low_9
NF20249_low_9
[»] chr7 (1 HSPs)
chr7 (99-233)||(23956653-23956787)
[»] chr6 (1 HSPs)
chr6 (160-232)||(11960316-11960388)
[»] chr5 (1 HSPs)
chr5 (162-232)||(13942248-13942318)
[»] scaffold0035 (1 HSPs)
scaffold0035 (160-232)||(34966-35038)
[»] chr4 (1 HSPs)
chr4 (1-33)||(2904485-2904517)
[»] chr1 (1 HSPs)
chr1 (160-207)||(17356102-17356150)


Alignment Details
Target: chr7 (Bit Score: 115; Significance: 2e-58; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 99 - 233
Target Start/End: Original strand, 23956653 - 23956787
Alignment:
Q  99 tggtcagttttaaactagcatctatttctcacaatttcgttaaattgcacaaatgcattggtgaaattctagcacacagtattaagatgttttatgcgaa 198  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||| |||||||     
T  23956653 tggtcagttttaaactagcatctatttctcacaatttcgttaaattgcacaagtgcattggtgaaattctagcacacaatattaagatgttctatgcgat 23956752  T
Q  199 gttccaacatcttacacatagacaacagatgttgc 233  Q
    ||||||||||||||||||||||||||| |||||||    
T  23956753 gttccaacatcttacacatagacaacaaatgttgc 23956787  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 11960316 - 11960388
Alignment:
Q  160 tgaaattctagcacacagtattaagatgttttatgcgaagttccaacatcttacacatagacaacagatgttg 232  Q
    |||||||||||||||||||||||||||||| ||| ||| ||||||| | |||||||| ||| ||| |||||||    
T  11960316 tgaaattctagcacacagtattaagatgttatattcgatgttccaataccttacacacagaaaacggatgttg 11960388  T

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Target: chr5 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 162 - 232
Target Start/End: Complemental strand, 13942318 - 13942248
Alignment:
Q  162 aaattctagcacacagtattaagatgttttatgcgaagttccaacatcttacacatagacaacagatgttg 232  Q
    |||||||| |||||| |||||||||||| ||||||| ||| ||||| | |||||| ||| ||| |||||||    
T  13942318 aaattctaccacacaatattaagatgttctatgcgatgtttcaacaccgtacacacagaaaacggatgttg 13942248  T

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Target: scaffold0035 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 232
Target Start/End: Original strand, 34966 - 35038
Alignment:
Q  160 tgaaattctagcacacagtattaagatgttttatgcgaagttccaacatcttacacatagacaacagatgttg 232  Q
    |||||||| |||||||| |||||||||||| |||| || ||| ||||| | |||||| ||| ||| |||||||    
T  34966 tgaaattccagcacacaatattaagatgttctatgtgatgtttcaacaccgtacacacagaaaacggatgttg 35038  T

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Target: chr4 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 2904517 - 2904485
Alignment:
Q  1 tcaatcattcttttttaatctaatgactcatat 33  Q
    |||| ||||||||||||||||||||||||||||    
T  2904517 tcaaccattcttttttaatctaatgactcatat 2904485  T

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Target: chr1 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 160 - 207
Target Start/End: Complemental strand, 17356150 - 17356102
Alignment:
Q  160 tgaaattctagcacac-agtattaagatgttttatgcgaagttccaaca 207  Q
    |||||||||||||||  ||| |||||||||||||||||| |||||||||    
T  17356150 tgaaattctagcacattagttttaagatgttttatgcgatgttccaaca 17356102  T

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