View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF2024R-Insertion-2 (Length: 343)
Name: NF2024R-Insertion-2
Description: NF2024R
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF2024R-Insertion-2 |
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Alignment Details
Target: chr6 (Bit Score: 317; Significance: 1e-179; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 317; E-Value: 1e-179
Query Start/End: Original strand, 9 - 337
Target Start/End: Complemental strand, 33967038 - 33966710
Alignment:
| Q |
9 |
aaacatgcattacattttcagcatgttgttatttcttcttcttcttgtacaaaatctgaccacaatacattgtcatacaaaaggaattcgaccgatacgt |
108 |
Q |
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| T |
33967038 |
aaacatgcattacattttcagcatgttgttatttcttcttcttcttgtacaaaatctgaccacaatacattgtcatacaaaaggaattcgaccgatacgt |
33966939 |
T |
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| Q |
109 |
tccgctcgaaacggtttatcaacctacaatacaacaagagcagacttagcagaacaacaattcacgaaatgggtgagttttgttggtggtctcaaacaca |
208 |
Q |
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| T |
33966938 |
tctgctcgaaacggtttatcaacctacaatacaacaagagcagacttagcagaacaacaattcatgaaatgggtgagttttgttggtggtctcaaacaca |
33966839 |
T |
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| Q |
209 |
ctgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaatccttcttttggagattttgatacaattcaagatgccat |
308 |
Q |
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| T |
33966838 |
ctgtttacaaggctgcaaaaaataagctatttgcttcttatactttgcacgttgataagaatccttcttttggagattttgatacaattcaaaatgccat |
33966739 |
T |
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| Q |
309 |
tgattctcttccttccatcaatcttgtta |
337 |
Q |
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| T |
33966738 |
tgattctcttccttccatcaatcttgtta |
33966710 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 45; Significance: 1e-16; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 158 - 266
Target Start/End: Original strand, 43076689 - 43076797
Alignment:
| Q |
158 |
cagaacaacaattcacgaaatgggtgagttttgttggtggtctcaaacacactgtttacaaggctgcaaaaaataagctatttgcttcttatactttgca |
257 |
Q |
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| T |
43076689 |
cagaacaacaattcatgaaatgggtgaaatttgttggtggtctcaaacatactgtctttagaacagccaaaaataagctttttccttcttatactttgaa |
43076788 |
T |
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| Q |
258 |
cgttgataa |
266 |
Q |
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| T |
43076789 |
cgtttataa |
43076797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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